Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00332 ATGGACGAAGATTTCGACATTCCGGCGGTTGATGAAATGAACGAAGATTTCGAATTCGCCGGCGCCGAAGGTAATCCAATTCTCAAGGTTGGCGAAGAGAAGGAGATCGGTAAGCAAGGTTTGAAGAAGAAGCTTCTTAAAGAAGGTGAAGGTTGGGATACTCCCGATGTTGGCGATGAAGTTTACGTTCACTATACTGGAACGTTGCTTGATGGTACTAAATTTGATTCTAGCAGAGATAGGGGAACACCTTTCAACTTTAAGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCCCTTTTCACCATACCACCTGAGTTAGCTTATGGTGAATCTGGTTCTCCTCCAACTATTCCTCCCAATGCTACTCTACAATTTGATGTTGAGCTGCTGTATTGGACTAGTGTGAAGGATATATGTAAGGATGGAGGATTGTTTAAGAAGATAGTTAAGGAGGGGGAGAAATGGGAAAACCCCAAGGATCCTGATGATGTCTTTGTTAAGTATGAAGCACGTCTTGACGATGGAACGCTTGTGGCAAAATCGGACGGGGTGGAGTTCACTGTGAAGGAGGGTCATTTCTGCCCTGCATTGTCAAAGGCTGTTAAGACCATGAAGAAGGGAGAGAAAGTGATCTTGACTGTGAAGCCACAATATGGATTTGGGGAGAAGGGCAAGCCAGCTCAGGGTGATGAAGGTGCAGTTCCACCTAATGCAACATTGCAGATTACTCTCGAGTTAGTTTCATGGAAGACTGTTTCTGAAGTAACTGATGATAAGAAGGTCATCAAAAAGATCATCAAGGAAGGAGAAGGATATGAGCGGCCGAATGAGGGAGCTGTCGTGAAATTGAAACTAATTGGCAAGCTGCAAGATGGCACTGTATTTTTGAAGAAAGGCCACGGTGATGACGAAGAAGATCTCTTTGAATTTAAAACAGACGAGGAGCAAGTGATTGATGGGCTTGATAGAGCTGTAATTACCATGAAGAAGGGTGAGGTAGCATTGCTGACTATTGCGCCTGAGTATGCTTTTGGTTCATCAGAGTCTCAACAGGAATTGGCTGTGGTTCCTCCAAATTCAACCGTGCATTATGAAGTTGAGCTGGTTTCGTTCGTAAAGGATAAGGAGTCCTGGGACATGAACACTGAAGAAAAGGTAGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGGGTTGTTTAAAGCTGGGAAATACTCAAAAGCTTCTAAAAGATATGAGAAGGCTGTTAAGTTCATAGAGTATGACACTTCCTATACTGAAGAGCAGAAGAAAACTGCCAAGGCCTTGAAGGTTGCTTGTAATCTGAATAATGCAGCATGTAAGCTGAAATTGAAAGATTATAAACAGGCGGAGAAATTGTGCACAAAGGTGCTGGAGCTTGAAAGCACAAATGTAAAGGCCCTCTATAGAAGGGCTCAGGCTTATATTCAGTTAGCTGATCTGGATTTGGCTGAATTTGATATCAAGAAAGCACTTGAGATTGACCCCAACAACAGGGATGTGAAGCTGGAGTATAAGACTTTGAAGGAAAAGATGAAGGAGATCAACAAGAAGGATGCACAGTTTTATGGGAATATGTTCAGCAAAATGAAAAAGTTGGATTCTCTTGACAATAATAAATCAGCGCCAAAGGATGCTGAACCCATGAGCATCGACAGCAAGGCATAG 1728 0.4265 MDEDFDIPAVDEMNEDFEFAGAEGNPILKVGEEKEIGKQGLKKKLLKEGEGWDTPDVGDEVYVHYTGTLLDGTKFDSSRDRGTPFNFKLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLYWTSVKDICKDGGLFKKIVKEGEKWENPKDPDDVFVKYEARLDDGTLVAKSDGVEFTVKEGHFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAQGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKIIKEGEGYERPNEGAVVKLKLIGKLQDGTVFLKKGHGDDEEDLFEFKTDEEQVIDGLDRAVITMKKGEVALLTIAPEYAFGSSESQQELAVVPPNSTVHYEVELVSFVKDKESWDMNTEEKVEAAGKKKEEGNGLFKAGKYSKASKRYEKAVKFIEYDTSYTEEQKKTAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPNNRDVKLEYKTLKEKMKEINKKDAQFYGNMFSKMKKLDSLDNNKSAPKDAEPMSIDSKA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00332 575 FunFam Peptidylprolyl isomerase 264 387 - -
Trre15g00332 575 SUPERFAMILY TPR-like 390 550 IPR011990 GO:0005515
Trre15g00332 575 Coils Coil 518 538 - -
Trre15g00332 575 SUPERFAMILY FKBP-like 268 402 - -
Trre15g00332 575 SUPERFAMILY FKBP-like 35 150 - -
Trre15g00332 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 285 382 IPR001179 GO:0003755
Trre15g00332 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 260 IPR001179 GO:0003755
Trre15g00332 575 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 54 143 IPR001179 GO:0003755
Trre15g00332 575 Gene3D - 149 263 IPR046357 GO:0003755
Trre15g00332 575 FunFam Peptidylprolyl isomerase 390 545 - -
Trre15g00332 575 SUPERFAMILY FKBP-like 148 266 - -
Trre15g00332 575 PANTHER PEPTIDYLPROLYL ISOMERASE 33 149 - -
Trre15g00332 575 FunFam Peptidylprolyl isomerase 150 263 - -
Trre15g00332 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 174 263 IPR001179 GO:0003755
Trre15g00332 575 MobiDBLite consensus disorder prediction 554 575 - -
Trre15g00332 575 Gene3D - 30 148 IPR046357 GO:0003755
Trre15g00332 575 Gene3D Tetratricopeptide repeat domain 388 545 IPR011990 GO:0005515
Trre15g00332 575 ProSiteProfiles TPR repeat profile. 485 518 IPR019734 GO:0005515
Trre15g00332 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 291 385 IPR001179 GO:0003755
Trre15g00332 575 Pfam Tetratricopeptide repeat 485 518 IPR001440 GO:0005515
Trre15g00332 575 SMART tpr_5 451 484 IPR019734 GO:0005515
Trre15g00332 575 SMART tpr_5 485 518 IPR019734 GO:0005515
Trre15g00332 575 SMART tpr_5 402 435 IPR019734 GO:0005515
Trre15g00332 575 FunFam Peptidylprolyl isomerase 31 149 - -
Trre15g00332 575 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 58 146 IPR001179 GO:0003755
Trre15g00332 575 Gene3D - 264 387 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00332 Trre-Chr15 2301192 2304958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00332 1 559 Calmodulin-binding Proteins AT3G25230 80.680 0.0 899
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00332 K09571 - gmx:100803189 974.926