Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00328 ATGCCAACTTGGCAACCAATTTCCTCAGCCATGGAAATTCAACAAACATCATTGAATTGTTCCTCTGACCAAACCCAAGATTGTTTTTTCAACCCAAATTGGGACAATAAGTCAACAGACCAAAACCTTAACTTTGATTCAGCACTTAGCTCAATTGTCTCATCCCCTGCAGCTACATCATCACCACCACAAAATCCCAACAATATTTCCAATGAAAATTTTGTGATGAGAGAATTACTAGGAAAATTAGGAACATTTGGTGAGATCTCACAACATTCTAAGGTCAACAACAACATTGTACCAATGATGAACCATTTTGTGAAAGAAAATATGCAAACTTTAGGAGGAAAATCAATGGCCATGAATTCATCTGTACCTGAATTTTCAGCTGATCCTGGTTTTGTTCAAAGGGCTGCAAAATTTTCTTGCTTTGGTAGCAAAAGTTTCAATGAAAGAAGTAATCAACATGTGATGAACAATGTTGATTTAGCTCAAAGATCTGTTAATTTACTACCAAGAGTTTCAAGTAGTCCTTCACTCAAAAACTTTGGATCTCAAATGGGTTACAAAGAGAACAAGAATTCTCCATTGCAACAAGAAAATGAGAAAATGGAAGTAGCTAATTCTCAAGAGGAGTCTACAATTTCTGAGCAAAATACACCAAATGGTGAAATGGGTGTGAAAGCTTCACCTGATATGAATTCAAGGAAAAGAAAAGCTTCTTCTTCTTCCAAAGGAAAAGCTTCAAACTTTACCAATCCTACTACCAAGGGTGTTGAAGGTAGTGGTGAAGATTCAAATGCAAAGAAAAGCAAGTCAAATGAAGGTGAGAAAATTGAGAATGGTGGCATGAATATGGAGGAAGAGTCCAAAGAAGGTAAAAATAATGCAGGGGAAGAGAAACAGAATAAGGGTAATTCAAAAGCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCATAGTCTTGCAGAACGTGTTCGGAGGGAAAAAATAAGTGAGAGGATGAAACTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAATTATGTTCAGTCATTGCAACGTCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCTGTTAACACAAGGATGGATTTAAGTATTGAAAGTCTTGTTCTATCAAAAGATATATTTCAATCAAATAATTCTTTGCAAAACTCAATATTCCAATTAGATTCTTTATCACCATCCTTTTATGGGCAACAACCTCAGCAAAACCAAGCTATTGCTAATACAAATGGGACACACTGCTCAGTGGACCCATTGGACTCTTCTTTGTGCCAAAATCTTGGCATAAATTTACCTTCCCTAAATGGATTTAATGAAGGTGGCTCTCAGTATCCATTAACATTCTCTGAGGAAGACTTAAACACAATTGTTCAAATGGGATTTGGCCAAACTTCAAACAGGACAACACCAATACACTCTCCAACTTTCAACGGTTCAAATCAAGCAACACAAATGAAAATTGAACTCTAA 1566 0.3621 MPTWQPISSAMEIQQTSLNCSSDQTQDCFFNPNWDNKSTDQNLNFDSALSSIVSSPAATSSPPQNPNNISNENFVMRELLGKLGTFGEISQHSKVNNNIVPMMNHFVKENMQTLGGKSMAMNSSVPEFSADPGFVQRAAKFSCFGSKSFNERSNQHVMNNVDLAQRSVNLLPRVSSSPSLKNFGSQMGYKENKNSPLQQENEKMEVANSQEESTISEQNTPNGEMGVKASPDMNSRKRKASSSSKGKASNFTNPTTKGVEGSGEDSNAKKSKSNEGEKIENGGMNMEEESKEGKNNAGEEKQNKGNSKAPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRMDLSIESLVLSKDIFQSNNSLQNSIFQLDSLSPSFYGQQPQQNQAIANTNGTHCSVDPLDSSLCQNLGINLPSLNGFNEGGSQYPLTFSEEDLNTIVQMGFGQTSNRTTPIHSPTFNGSNQATQMKIEL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00328 521 Gene3D - 322 397 IPR036638 GO:0046983
Trre15g00328 521 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 198 436 IPR024097 GO:0006355
Trre15g00328 521 MobiDBLite consensus disorder prediction 174 225 - -
Trre15g00328 521 MobiDBLite consensus disorder prediction 244 262 - -
Trre15g00328 521 SMART finulus 331 381 IPR011598 GO:0046983
Trre15g00328 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 394 IPR036638 GO:0046983
Trre15g00328 521 MobiDBLite consensus disorder prediction 263 313 - -
Trre15g00328 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 375 IPR011598 GO:0046983
Trre15g00328 521 CDD bHLH_AtBPE_like 315 400 - -
Trre15g00328 521 FunFam Basic helix-loop-helix transcription factor 322 394 - -
Trre15g00328 521 MobiDBLite consensus disorder prediction 174 313 - -
Trre15g00328 521 Coils Coil 372 392 - -
Trre15g00328 521 Pfam Helix-loop-helix DNA-binding domain 329 376 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00328 Trre-Chr15 2257033 2260262 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00328 34 475 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 42.251 3.94e-78 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g00328 HLH 4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00328 - - gmx:100801233 628.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01072 13 8532596 8535659 Trre15g00328 15 2257033 2260262 PCT