Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00327 ATGGAAAACCAATTTTTTATGAATGTTGGGTTTGAACCTTTACCTCATTCTTCAATGCCAACTTGGCAACCAATTTCCTCAGCCATGGAAATTCAACAAACATCATTGAATTGTTCCTCTGACCAAACCCAAGATTGTTTTTTCAACCCAAATTGGGACAATAAGTCAACAGACCAAAACCTTAACTTTGATTCAGCACTTAGCTCAATTGTCTCATCCCCTGCAGCTACATCATCACCACCACAAAATCCCAACAATATTTCCAATGAAAATTTTGTGATGAGAGAATTACTAGGAAAATTAGGAACATTTGGTGAGATCTCACAACATTCTAAGGTCAACAACAACATTGTACCAATGATGAACCATTTTGTGAAAGAAAATATGCAAACTTTAGGAGGAAAATCAATGGCCATGAATTCATCTGTACCTGAATTTTCAGCTGATCCTGGTTTTGTTCAAAGGGCTGCAAAATTTTCTTGCTTTGGTAGCAAAAGTTTCAATGAAAGAAGTAATCAACATGTGATGAACAATGTTGATTTAGCTCAAAGATCTGTTAATTTACTACCAAGAGTTTCAAGTAGTCCTTCACTCAAAAACTTTGGATCTCAAATGGGTTACAAAGAGAACAAGAATTCTCCATTGCAACAAGAAAATGAGAAAATGGAAGTAGCTAATTCTCAAGAGGAGTCTACAATTTCTGAGCAAAATACACCAAATGGTGAAATGGGTGTGAAAGCTTCACCTGATATGAATTCAAGGAAAAGAAAAGCTTCTTCTTCTTCCAAAGGAAAAGCTTCAAACTTTACCAATCCTACTACCAAGGGTGTTGAAGGTAGTGGTGAAGATTCAAATGCAAAGAAAAGCAAGTCAAATGAAGGTGAGAAAATTGAGAATGGTGGCATGAATATGGAGGAAGAGTCCAAAGAAGGTAAAAATAATGCAGGGGAAGAGAAACAGAATAAGGGTAATTCAAAAGCTCCTGAACCTCAAAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGACAGTCATAGTCTTGCAGAACGTGTTCGGAGGGAAAAAATAAGTGAGAGGATGAAACTTCTCCAAGATCTTGTACCAGGTTGCAATAAGGTTACTGGAAAAGCACTTATGCTTGATGAAATTATAAATTATGTTCAGTCATTGCAACGTCAAGTTGAGTTTTTGTCTATGAAATTGTCTTCTGTTAACACAAGGATGGATTTAAGTATTGAAAGTCTTGTTCTATCAAAAGATATATTTCAATCAAATAATTCTTTGCAAAACTCAATATTCCAATTAGATTCTTTATCACCATCCTTTTATGGGCAACAACCTCAGCAAAACCAAGCTATTGCTAATACAAATGGGACACACTGCTCAGTGGACCCATTGGACTCTTCTTTGTGCCAAAATCTTGGCATAAATTTACCTTCCCTAAATGGATTTAATGAAGGTGGCTCTCAGTATCCATTAACATTCTCTGAGGAAGACTTAAACACAATTGTTCAAATGGGATTTGGCCAAACTTCAAACAGGACAACACCAATACACTCTCCAACTTTCAACGGTTCAAATCAAGCAACACAAATGAAAATTGAACTCTAA 1620 0.3605 MENQFFMNVGFEPLPHSSMPTWQPISSAMEIQQTSLNCSSDQTQDCFFNPNWDNKSTDQNLNFDSALSSIVSSPAATSSPPQNPNNISNENFVMRELLGKLGTFGEISQHSKVNNNIVPMMNHFVKENMQTLGGKSMAMNSSVPEFSADPGFVQRAAKFSCFGSKSFNERSNQHVMNNVDLAQRSVNLLPRVSSSPSLKNFGSQMGYKENKNSPLQQENEKMEVANSQEESTISEQNTPNGEMGVKASPDMNSRKRKASSSSKGKASNFTNPTTKGVEGSGEDSNAKKSKSNEGEKIENGGMNMEEESKEGKNNAGEEKQNKGNSKAPEPQKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRMDLSIESLVLSKDIFQSNNSLQNSIFQLDSLSPSFYGQQPQQNQAIANTNGTHCSVDPLDSSLCQNLGINLPSLNGFNEGGSQYPLTFSEEDLNTIVQMGFGQTSNRTTPIHSPTFNGSNQATQMKIEL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00327 539 MobiDBLite consensus disorder prediction 281 331 - -
Trre15g00327 539 Gene3D - 340 415 IPR036638 GO:0046983
Trre15g00327 539 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 216 453 IPR024097 GO:0006355
Trre15g00327 539 MobiDBLite consensus disorder prediction 192 331 - -
Trre15g00327 539 Coils Coil 390 410 - -
Trre15g00327 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 343 393 IPR011598 GO:0046983
Trre15g00327 539 MobiDBLite consensus disorder prediction 192 243 - -
Trre15g00327 539 CDD bHLH_AtBPE_like 333 418 - -
Trre15g00327 539 MobiDBLite consensus disorder prediction 262 280 - -
Trre15g00327 539 Pfam Helix-loop-helix DNA-binding domain 347 394 IPR011598 GO:0046983
Trre15g00327 539 FunFam Basic helix-loop-helix transcription factor 340 412 - -
Trre15g00327 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 412 IPR036638 GO:0046983
Trre15g00327 539 SMART finulus 349 399 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00327 Trre-Chr15 2256979 2260262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00327 1 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G48560 43.376 1.56e-81 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre15g00327 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00327 - - gmx:100801233 640.573