Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00324 ATGCTTCGATTTCTTTCAAATGGGTCAAATCTTTTTCAGCATTCTACCTTCTTCACCCAGGTATTCATAAAATCCTTGCCAATTTTCACTCCCGCCACCTATTCGACGAAAGTCCCAGCCGAAAATGAGGTTGAATTGCAAAAAGTTAGTGACAATTGGAAGGATGCTACTGAAGTTTTGAGTAAATGGGGTTGTGGTGATGATGATTTGAAGAGAATATTCACTCGTTGCCCTTCAGTACGCAATGCGGACCCTTCTCAGGTTCAGTCAAAACTTTGCTTGCTTAGTGACCTGGGTTTAGGGTCAGCTGAACTTGTGAAGATTATTAATTGCAGGCCTCGATTTTTCAGGACTCGGATGAACATTAAATTCGACGAGAGGCTTGACTCTCTTATGACATTGTTTGAGTCAAGGGAAATGCTTCATAAGGCCATTGCAAGAAACCCTTCATTGCTATGTGAAAATAGCTATGACTTTGAAAGTATTGTTGCACAGTATGAAAAATTGGGTGTGACGAAGAAGGACTTGGTTCAAATGCTGATTTTGCGGCCAACGATCATGTCAAGGACTTCCTTTGACGACGAGAAGATGAAATATATAAATAGGACTGGGGTTTCTAAGGATGCAAAATTGTACAAATATGTGGTGACATTAATAGGCATCTCTCGCCTGGAAACGATTCGCGAAAAGGTGTTGAATTTTACAAAGTTTGGTTTTTCGGAGGATGAGATACTTGGTCTTTTTGGGAAGTCTCCTCATATTTTGACATTGTCAACTGATAAGGTTCAGAGGAACATGACTTTCGTTTTAGGTACAATGAAGCTTGAAGCTAAGATAATCTTTAAGTGCCCATATCTCTTGTTTGCAAATATGGAGACTATTTTGAAGCCACGGGCACTTCTAGCATTGAAGATACAAGATATGGATTCTAAGTTTAAAATACCCTCAATACTCACAGCATTGAGGATGTCAGAGGAGAGGTTTTTAAAATTGTTTGTCAAATGTCATGACAAGGAAATTGCTGATGAATTAATGGAATTTTATAAAAGGACAAAAGAGGTTAAGAGATTAGCAGCTTCATCAAAGAAAATTACTTCTAGAGGATTCCCTTTCTGA 1116 0.3862 MLRFLSNGSNLFQHSTFFTQVFIKSLPIFTPATYSTKVPAENEVELQKVSDNWKDATEVLSKWGCGDDDLKRIFTRCPSVRNADPSQVQSKLCLLSDLGLGSAELVKIINCRPRFFRTRMNIKFDERLDSLMTLFESREMLHKAIARNPSLLCENSYDFESIVAQYEKLGVTKKDLVQMLILRPTIMSRTSFDDEKMKYINRTGVSKDAKLYKYVVTLIGISRLETIREKVLNFTKFGFSEDEILGLFGKSPHILTLSTDKVQRNMTFVLGTMKLEAKIIFKCPYLLFANMETILKPRALLALKIQDMDSKFKIPSILTALRMSEERFLKLFVKCHDKEIADELMEFYKRTKEVKRLAASSKKITSRGFPF 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00324 371 Pfam mTERF 126 329 IPR003690 GO:0003690|GO:0006355
Trre15g00324 371 Pfam mTERF 58 187 IPR003690 GO:0003690|GO:0006355
Trre15g00324 371 FunFam Mitochondrial transcription termination factor family protein 124 342 - -
Trre15g00324 371 PANTHER CGI-12 PROTEIN-RELATED 24 337 IPR003690 GO:0003690|GO:0006355
Trre15g00324 371 SMART mt_12 106 138 IPR003690 GO:0003690|GO:0006355
Trre15g00324 371 SMART mt_12 245 276 IPR003690 GO:0003690|GO:0006355
Trre15g00324 371 SMART mt_12 209 240 IPR003690 GO:0003690|GO:0006355
Trre15g00324 371 SMART mt_12 71 101 IPR003690 GO:0003690|GO:0006355
Trre15g00324 371 SMART mt_12 142 172 IPR003690 GO:0003690|GO:0006355
Trre15g00324 371 SMART mt_12 277 309 IPR003690 GO:0003690|GO:0006355
Trre15g00324 371 Gene3D Transcription termination factor 3, mitochondrial 32 217 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00324 Trre-Chr15 2224546 2225661 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre15g00324 mTERF 2.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00324 K15032 - gmx:100799629 476.863