Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00314 ATGGGTGGATCGGGTAAAACAACAACAGCCAGAGCTATCTACAACCAGTTTCATAGCAAATTTCTGAATCACTGTTTCATTGAGAATATCAGAGAAGTCTGTAACAGAGGTGATGATGGGATTATTCTTTTACAAGAACAACTTCTTTCAAATGTCCTGAAACCAAATGAGAAAATACACAGCACGGCATCCGGGATAACCACAATTGAGAAAATATATATGGGGAAAAGGGCATTCATTGTACTCGATGACGTTAGCACATTTGAGCAAGTAGAATCCCTATGTGGAAATCGTAAATGTTTTGGTGCGGGAAGTGTACTGATTGTTACATCTAGGGATGTAAACATACTTAAGAAAATTGAAGTTGATTATATCTATAACATAAAGGAAATGGACGAAATCAAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTAAAAAACCAAGTCCAAAAGACGACTTCAGAGAACTCTCAAGCAGCATAGTTACTTACTGTAGAGGATTACCACTGGCTCTTGAAGTCATTGGATCTTACTTGCGTGAAAGGACAAAAAAAGAATGGAGAAGTGTACTATCAACATTAGAGAGAATTCCTGATAATCAAGTGCATGAGAAACTGAGAATAAGCTATGATGGTTTAAAGAAGGATACGGAAAAGGATATATTTCTTCACATATGTTGTTTCTTTATTGGTAAGGAAAACGCCTATGTTTCAGAGATTATAGATGGTTGTGGCCTTTATGCTGGTATTGGAATAACTGTCCTCATAGAGCGGAGCCTCCTAAAAGTTGAAAAGAACAACAAACTTGGAATGCATGATTTGCTACGAGACATGGGAAGAGAGATTGTTCGTGAAAGATCAATAAAACTGCCTGGGAAGCGTAGTCGATTGTGGTTTCATGAGGATGCACATAAAGTATTGACAGAAAATTCTGGAACAGAAACTGTGGAAGGATTGGTTTTGAAGTCGCAAAGCACCAGCAATGTTTGTATCGAAACTGACACTTTCAAGGAGATGAAGAATTTGAAACTTTTCCGACTTGATCATGTTGATGTTTGTGGAGCTTTTAAGTATCTTTCTAAAGAACTGAGATGGCTCCATTGGAAGCGGTTTAATCTCGAATATATACCTGATGACTTTTATCTGGGAAATCTTGTTGTTTTTGAGTTAAAACACAGCAATATTAAACGAGTCTGGAATGAAACCAAGTTGATGGAGAAGCTGAAAATTCTCAATCTCAGTCATTCTAAGTATCTGACAAGCACTCCTGACTTTTCAAAATTACCAAATCTAGAAAAGCTCATTATGAAGGACTGTCCACGCTTGTCTGAGGTACACCAGTCAATTGGGGATCTGAGGAATCTTCTTCTGATAAATTTGGAAGACTGTACAAGTCTTAGCAATCTCCCAGAGAACATAAATCAATTGAAGTCTTTGACAACTCTCATCCTTTCTGGTTGTTCAAAGATTGATAGGTTGGAAGAAGGCATAGTGCAAATGGAATCCTTGACAACACTGGTCATAAAAGGTTCAGGTGTAAAAGAGGTGCCATATTCAGTGATAAGATTGAAAAGCATCGGGTATATATCTCTATGCGGATATGAAGGATTATCACATGATGTTTTTCATTCTGTCATTCAGTCTTGGATGTCAGCAACAATTGATACTTTTCCTCATAATAACTTGGACTTTCTAACACCAATAGTTAGGAGCCTTCAACAACTCCGAACTGTTTGGATACAATGCCACTCAGAAAATCAACTAACTCAAGAATTAAAAATAATTCTTCATGATCAATATGATAGTACTTGTACTAAACTGGAAGCATTGCAAATGCAAAATCTTTCCTCAAGATCTCATTTGATTGGAATGAGAAGTTGCTCTGCAGTCATGCATACTCTTGACAAGAGCAGATCACAGGGATTAACAACCAATGATTCGAGCAATTTTTTCCTTCCGGGTGGCAATCATCCTTCTTGTTTAGCCTATACAGGGGTAGGACCTTCAGCACCATTTCAAGTTCCTAAGGATATTGATTGTCGCATGGAGGGAATAGTCTTACGTGTTGTGTATTCATCAACATCTGAAAACATGGCATCTGAATGTCTTACTAGTGTCTTGATTGTTAAATACACAAAGTGCACCATCCATATTTACAAGCGAGACACAATCATGTCATTTAATGATGAAGATTGGAAGAATGTAACATCAAATCTAGGACCTGGCGACAATGTGAAGATTTATGTAGCTTTTGGGCATGGATTGATTGTTAAGAAGACAATTGTGTATCTAGTATCTTGCCAGTCAATTATTGTGGAAGTTGATGATGCTAACATGGAAGTGGAGCCTCAAGAGAAAGTTGATGATGCTAACATGGAAGTGGAGCCCAATAAAAGTATAGTTACAAGATATCCAAACAGAGTAGGTGCATTTTTATGCTTTAACCAGCATAGAGATTAA 2460 0.3744 MGGSGKTTTARAIYNQFHSKFLNHCFIENIREVCNRGDDGIILLQEQLLSNVLKPNEKIHSTASGITTIEKIYMGKRAFIVLDDVSTFEQVESLCGNRKCFGAGSVLIVTSRDVNILKKIEVDYIYNIKEMDEIKSLELFSWHAFKKPSPKDDFRELSSSIVTYCRGLPLALEVIGSYLRERTKKEWRSVLSTLERIPDNQVHEKLRISYDGLKKDTEKDIFLHICCFFIGKENAYVSEIIDGCGLYAGIGITVLIERSLLKVEKNNKLGMHDLLRDMGREIVRERSIKLPGKRSRLWFHEDAHKVLTENSGTETVEGLVLKSQSTSNVCIETDTFKEMKNLKLFRLDHVDVCGAFKYLSKELRWLHWKRFNLEYIPDDFYLGNLVVFELKHSNIKRVWNETKLMEKLKILNLSHSKYLTSTPDFSKLPNLEKLIMKDCPRLSEVHQSIGDLRNLLLINLEDCTSLSNLPENINQLKSLTTLILSGCSKIDRLEEGIVQMESLTTLVIKGSGVKEVPYSVIRLKSIGYISLCGYEGLSHDVFHSVIQSWMSATIDTFPHNNLDFLTPIVRSLQQLRTVWIQCHSENQLTQELKIILHDQYDSTCTKLEALQMQNLSSRSHLIGMRSCSAVMHTLDKSRSQGLTTNDSSNFFLPGGNHPSCLAYTGVGPSAPFQVPKDIDCRMEGIVLRVVYSSTSENMASECLTSVLIVKYTKCTIHIYKRDTIMSFNDEDWKNVTSNLGPGDNVKIYVAFGHGLIVKKTIVYLVSCQSIIVEVDDANMEVEPQEKVDDANMEVEPNKSIVTRYPNRVGAFLCFNQHRD 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00314 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 225 IPR027417 -
Trre15g00314 819 Pfam NB-ARC domain 1 198 IPR002182 GO:0043531
Trre15g00314 819 Gene3D - 131 214 IPR042197 -
Trre15g00314 819 PRINTS Disease resistance protein signature 474 490 - -
Trre15g00314 819 PRINTS Disease resistance protein signature 165 179 - -
Trre15g00314 819 PRINTS Disease resistance protein signature 72 86 - -
Trre15g00314 819 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 519 IPR044974 GO:0006952
Trre15g00314 819 SUPERFAMILY "Winged helix" DNA-binding domain 201 307 IPR036390 -
Trre15g00314 819 Gene3D - 1 125 IPR027417 -
Trre15g00314 819 FunFam Disease resistance protein (TIR-NBS-LRR class) 132 214 - -
Trre15g00314 819 Gene3D Ribonuclease Inhibitor 311 648 IPR032675 -
Trre15g00314 819 SUPERFAMILY L domain-like 326 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00314 Trre-Chr15 2149907 2152858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00314 1 522 WRKY Transcription Factor Family AT5G45050 31.818 2.38e-71 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00314 - - tpra:123923844 1431.39