Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00313 ATGTCTTCTACTTCATCCTCCAATCCTCAATGGATAAACGAAGTGTTCATCAATTTTAGAGGAGAAGACACTCGTCAGAGCTTCATTTCTCATCTCTATGCTGCTCTAAAAAATGCCGGAATCAACACTTATATTGACCGTCAGCTTCCTAAAGGAACCGAGCTTGGACCAGAACTATCACGAGCAATAGAAGGGTCTCATATATCTATTGTTGTTTTCTCCAAAAGATATACAGAATCGAGCTGGTGTCTTAATGAGCTGAAACAGGTCATGGAATGCCACAGAACTCATGGCCAGGTGGTTGTCCCTGTATTTTACGATGTTGATGCTTCGGTTGTGCGCCAACAGAAGGGTGATTTTGGAAAAGTTTTGAGAGCTACGGTGAAAAAAACATACTCTGACTCAGGAGACGAAAGGATGGAACACGTGCTGGCCAAGTGGAGGAGTGCACTCACCCAAGCTGCTAATTTGTCTGGTTGGGATGTCAACAATTGCAGGAATGAAGCTGAACTAGTGCAGCAAATTGTTGAGGACATTTTGACAAAACTAGATATCACACTGTTGCCTATTACCGAATTTCCAGTTGGATTGGGATCCCGTGTCCAAGGAGTGATTGAGTTTATTGAAAATCAATCAAGCCAGATTTGTATCATAGGGATATGGGGAATGGGTGGATCCGGTAAAACAACCACAGCTATTTACAATAGAATTCATCGCAAATTTGTCGATAGAAGTTTCATTGAAAATGTTAGAGAAGTCTGTGAAAAGGAAAATAGAGGGATTATTCATTTACAAGAACAGCTACTTTCAGATATCTTGAACACAAAGGAGAAGATACACAACGTTGCGTTAGGGACAACTAAGATTGAGAAAAGATTTTGGGGGAAAAAAGCACTTGTTGCACTTGATGATGTGACCACATTTGAACAGTTAAAATCGCTATGTAGAAATCCCAAATTGTTCGGATTGGGAAGTGTGTTAATTGTAACAACCAGAGATATGCGCCTACTTAATTTATTTAAGGTTCATTATGTGTGTACGATGATGGAAATGAATGAAATGGAGTCCCTTCAGCTTTTCTGTTGGCATGCTTTTAGACAACCTAGTCCAATAAAAGACTTCTATGAACTCTCAAGGAACGTAGTTGCTTATTGTGGAGGATTACCGGTTGCTCTTGAAGTCCTTGGTTGTTACTTATCGGAGAGGACAAAAGCAGAATGGAGAAGTGTACTCTCAAAATTAAAGAGAATTCCCAATGATCAAGTACAAGAGAAATTGAGAATCAGCTATGATGGTTTAAAGGATGATATGGAAAAGGATATATTTCTTGATATATGTTGTTTCTTCATCGGAAAAGACAGAGCCTATGTTACAAATATACTAAATGGTTGTGGACTTCATGCTGATATTGGAATATCTGTCCTCGTAGAACGGAGTCTTGTAAAAATTGAAAAGAATAACAAGCTTGCAATGCATGACTTAATAAGAGATATGGGAAGAGAAATTGTTCGCAAAAGGTCAGCAAAAGAGCCTGGGAAACGTAGTCGATTGTGGATTCGTGAGGATGTATATGATGTTTTGACTAAGCATAATGGAACAGAAACTGTAGAGGGATTGGTTTTGAAGTTGCAAAGAACCAGCAGAGTTTGCTTCAGTGCTAATTCATTCAAGGAGATGAGGAATCTGAGACTTCTACAACTTGATTGTGTTGATCTCAGAGGAGATTATGGATGTCTTTCTAAACAATTGAGATGGGTCCATTGGCAACAATCCACCTTCAAGTCTATACCCAATGACTTTTATCTGGAAAATCTAGTTGTTATTGACTTAAAACACAGTAGTATTAGACAACTTTGGAATGAAACCAAGTTGTTGTGGAACCTAAAAATTCTCAATCTCAGTCATTCCAAGCACTTGAAAAGCACTCCTGACTTTTCAAAATCACCAAATCTAGAAAAGCTCATCATGAAGGATTGTCCAAACTTATCAGAGGTACACCAATCCATTGGAGATCTCAATAGTCTTCTTCTGGTAAATTTGAAGGATTGTACAAGGCTTAGTGATCTTCCAAGAAATATCTATCAATTGAAATCTTTGAAAACTCTCATCCTTTCTGGTTGTTCAAAGATTGACAAGTTGGAAGAAGACATAGAGCAGATGGAATCCTTGACAACACTGATTGCAAAAGATACAGCTATAAAAGATGTTCCATATTCAATAATAAGATCGAAAAGCATTGGATACATATCCTTATGTGGATATGAAGGATTATCCTGTAATGTTTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACATTAAATTCTCTACCCCGCATTTCCCCATTTGGGAACATTTCATTGTCACTATCTGCCACCGGTTTAGATAATAACAACTTGGGTCTTCTATCACCTATGGTTAGAAGCCTTTCCAAAATCAGAACTGTTTGGGTACAATGCCGCTCGAAGATTCAACTAACTCAAGAATTACAAAGAATTCTTGATCAATATGGTGTAAATATTTATGAAATGGAAACATCATGTGCATCACAAATCTCAAACCTTTCCTTGAGATCGTTGTTGATTGTAATGGGAAGTTGCCACATAGTCATCGACACTCCTGCTAAGACCATATCACAGGGATTAACAACCAATGATTCGAGTGATTTTTCCCTTCTGGGTGGCAATCATCCTTCTTGGTTAGCCTATACAGGTGAAGGACCTTCAGCACGATTTCAAGTTCCCGAGGATATTGATTGTCACGTAAAGGGAATAAACTTATGTGTTGTTTATTCATCAACATCTGAAAACATCGGAGCTGAATGTCTTACTAGTGTCTTGATCATTAATTACACAAAATGCACCGTTCAGATATACAAGCGCGACACAGTAATGTCCTTTAATGATGAAGATTGGAAGAATGTAACATCAAATCTAGGACCCGGTGACGATATGGAGATCTTTGTAGCTTTTGGGCATGGATTAATTGTTAAGGAGACAATTGTCTATCTATTTTATGACCCGTCAATTACTACGGAATTTGAACAATCAATTATTATGGAAGTTGGGCCATCAACTAATATGGAAATCAAGCCATTGGAGGAAGTGAACGTGCAGCCGTCACCTATAGGGGACGTGCAACCATCATCTAACGTGGAAGTGGAGGCATCAATTACTAAGAAAATTGAACAAGTGAACGTGCAGTCGTCGCCTGAAGCGGACATGCAACCATCTCCTAATGTGAAAGTGGAGGCATCAACTTACATGGAAATAGAGCCATTAGCCGAAGCGAATGTGCAGTCGTCACCTGAAGTGGACATCCAACCATCTCCCAATGTGAAAGTGGAGGCATCAACTAATGTTAAAACTGATTCATCACCTGAAGTGAAGGTGCAGTCATCACCTATCATGGAAATGAAGCCATCACCAAAGCTCAATAAAAGTATCTTTACAAAACTTGGAAAAAGAATGGGCGCATGTTTTTATGCTTGA 3492 0.3877 MSSTSSSNPQWINEVFINFRGEDTRQSFISHLYAALKNAGINTYIDRQLPKGTELGPELSRAIEGSHISIVVFSKRYTESSWCLNELKQVMECHRTHGQVVVPVFYDVDASVVRQQKGDFGKVLRATVKKTYSDSGDERMEHVLAKWRSALTQAANLSGWDVNNCRNEAELVQQIVEDILTKLDITLLPITEFPVGLGSRVQGVIEFIENQSSQICIIGIWGMGGSGKTTTAIYNRIHRKFVDRSFIENVREVCEKENRGIIHLQEQLLSDILNTKEKIHNVALGTTKIEKRFWGKKALVALDDVTTFEQLKSLCRNPKLFGLGSVLIVTTRDMRLLNLFKVHYVCTMMEMNEMESLQLFCWHAFRQPSPIKDFYELSRNVVAYCGGLPVALEVLGCYLSERTKAEWRSVLSKLKRIPNDQVQEKLRISYDGLKDDMEKDIFLDICCFFIGKDRAYVTNILNGCGLHADIGISVLVERSLVKIEKNNKLAMHDLIRDMGREIVRKRSAKEPGKRSRLWIREDVYDVLTKHNGTETVEGLVLKLQRTSRVCFSANSFKEMRNLRLLQLDCVDLRGDYGCLSKQLRWVHWQQSTFKSIPNDFYLENLVVIDLKHSSIRQLWNETKLLWNLKILNLSHSKHLKSTPDFSKSPNLEKLIMKDCPNLSEVHQSIGDLNSLLLVNLKDCTRLSDLPRNIYQLKSLKTLILSGCSKIDKLEEDIEQMESLTTLIAKDTAIKDVPYSIIRSKSIGYISLCGYEGLSCNVFPSIIWSWMSPTLNSLPRISPFGNISLSLSATGLDNNNLGLLSPMVRSLSKIRTVWVQCRSKIQLTQELQRILDQYGVNIYEMETSCASQISNLSLRSLLIVMGSCHIVIDTPAKTISQGLTTNDSSDFSLLGGNHPSWLAYTGEGPSARFQVPEDIDCHVKGINLCVVYSSTSENIGAECLTSVLIINYTKCTVQIYKRDTVMSFNDEDWKNVTSNLGPGDDMEIFVAFGHGLIVKETIVYLFYDPSITTEFEQSIIMEVGPSTNMEIKPLEEVNVQPSPIGDVQPSSNVEVEASITKKIEQVNVQSSPEADMQPSPNVKVEASTYMEIEPLAEANVQSSPEVDIQPSPNVKVEASTNVKTDSSPEVKVQSSPIMEMKPSPKLNKSIFTKLGKRMGACFYA 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00313 1163 ProSiteProfiles TIR domain profile. 11 183 IPR000157 GO:0007165
Trre15g00313 1163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 445 IPR027417 -
Trre15g00313 1163 Pfam NB-ARC domain 204 424 IPR002182 GO:0043531
Trre15g00313 1163 PRINTS Disease resistance protein signature 292 306 - -
Trre15g00313 1163 PRINTS Disease resistance protein signature 694 710 - -
Trre15g00313 1163 PRINTS Disease resistance protein signature 217 232 - -
Trre15g00313 1163 PRINTS Disease resistance protein signature 385 399 - -
Trre15g00313 1163 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 758 IPR044974 GO:0006952
Trre15g00313 1163 SUPERFAMILY "Winged helix" DNA-binding domain 421 527 IPR036390 -
Trre15g00313 1163 SUPERFAMILY L domain-like 540 821 - -
Trre15g00313 1163 Gene3D Ribonuclease Inhibitor 526 865 IPR032675 -
Trre15g00313 1163 Gene3D - 350 434 IPR042197 -
Trre15g00313 1163 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 185 - -
Trre15g00313 1163 Pfam TIR domain 15 184 IPR000157 GO:0007165
Trre15g00313 1163 SMART till_3 12 157 IPR000157 GO:0007165
Trre15g00313 1163 Gene3D - 188 345 IPR027417 -
Trre15g00313 1163 MobiDBLite consensus disorder prediction 1101 1132 - -
Trre15g00313 1163 Gene3D - 7 187 IPR035897 -
Trre15g00313 1163 FunFam Disease resistance protein (TIR-NBS-LRR class) 352 434 - -
Trre15g00313 1163 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 160 IPR035897 -
Trre15g00313 1163 MobiDBLite consensus disorder prediction 1099 1133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00313 Trre-Chr15 2142611 2146747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00313 14 740 WRKY Transcription Factor Family AT4G12020 30.106 4.25e-73 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00313 - - tpra:123923859 1357.81