LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g00311	ATGGCACCAAACGCTGCGGTGGTGAAACAAGCGGAGCTGTTGAGAAACGACGGTAATCATTACTTCAAGAAAGCCCGTTTTGGTGCCGCCATCGATGCTTACACTGAGGCAATAACGCTTTGCCCTAATGTTCCGGTTTATTTTACGAATCGTGCTCTGTGCCATCTCAAACGCAATGATTGGGAGAGGGTTGAGGAAGACTGTAGAAGGGCAATTCAGCTGGACAGCAATTCGGTTAAGGCACACTATATGTTGGGTCTTGCGTTGCTAGAGAAAAAAGAACTTACGAAAGGAATCAAAGAATTGGAAAGGGCTTTGAATCTTGGGAGAGGGGCCAATCCAAAGGGCTATATGGTAGAAGAAATATGGAAAGTGCTCGCAAAGGCAAAATACAATGAGTGGGAACGTTCTTCGTCCCAACGATCATGGGAATTGCAGAGCTTAAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAACATTTTCTCGAAGTCTCTGAGATGGAAGGATTTGTAGATGATGCTACAACTTCCCATTTGAAACAGTTGGAGGCTTTAGAAACAGTCTTCGAAAAAGCTGCAGAGGATGACACACCTTCTGAGGTGCCAGATTATCTATGCTGTAGAATAACACTTGATATTTTTCATGATCCTGTAATCACTCCAAGTGGACTTACATATGAGAGGGCAGTGATTCTCGAGCATCTTCAGAAGGTGGGTGGATTTGATCCGATCACGAGGGAACCACTTGATTCATCACAACTAGTACCAAATTTGGCCATTAAGGAAGCCGTTCAGGAATACTTGGAAAAACATGGATGGGCTTACAAGATAGATTAA	837	0.4361	MAPNAAVVKQAELLRNDGNHYFKKARFGAAIDAYTEAITLCPNVPVYFTNRALCHLKRNDWERVEEDCRRAIQLDSNSVKAHYMLGLALLEKKELTKGIKELERALNLGRGANPKGYMVEEIWKVLAKAKYNEWERSSSQRSWELQSLKEACESALKEKHFLEVSEMEGFVDDATTSHLKQLEALETVFEKAAEDDTPSEVPDYLCCRITLDIFHDPVITPSGLTYERAVILEHLQKVGGFDPITREPLDSSQLVPNLAIKEAVQEYLEKHGWAYKID	278

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g00311	278	SMART	tpr_5	79	112	IPR019734	GO:0005515
	Trre15g00311	278	SMART	tpr_5	45	78	IPR019734	GO:0005515
	Trre15g00311	278	SMART	tpr_5	11	44	IPR019734	GO:0005515
	Trre15g00311	278	Coils	Coil	145	165	-	-
	Trre15g00311	278	ProSiteProfiles	TPR repeat profile.	11	44	IPR019734	GO:0005515
	Trre15g00311	278	Pfam	U-box domain	201	273	IPR003613	GO:0004842\|GO:0016567
	Trre15g00311	278	SUPERFAMILY	TPR-like	9	109	IPR011990	GO:0005515
	Trre15g00311	278	ProSiteProfiles	U-box domain profile.	200	274	IPR003613	GO:0004842\|GO:0016567
	Trre15g00311	278	SMART	Ubox_2	204	267	IPR003613	GO:0004842\|GO:0016567
	Trre15g00311	278	CDD	RING-Ubox_CHIP	201	271	IPR045202	-
	Trre15g00311	278	SUPERFAMILY	RING/U-box	193	275	-	-
	Trre15g00311	278	Pfam	Tetratricopeptide repeat	80	108	IPR019734	GO:0005515
	Trre15g00311	278	Gene3D	Tetratricopeptide repeat domain	6	141	IPR011990	GO:0005515
	Trre15g00311	278	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE CHIP	8	276	IPR045200	GO:0000209\|GO:0061630
	Trre15g00311	278	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	199	277	IPR013083	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g00311	Trre-Chr15	2130262	2133952	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g00311	11	277	U-box Gene Family	AT3G07370	70.787	7.31e-142	398

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g00311	K09561		-	gmx:100796519	471.47