Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00308 ATGAATAGCAGCGAAAACAACCAAAACAGCACAGTAAAATCATTAGATTTCAACAACCTCAAAGTTATCTCCGCCGTAGGACGCGGCGCCAAAGGCGTCGTGTTCCTTGCAACAACAGGTAACCAGTCATCCAACGAGTGTGTAGCTCTGAAAGTAATATCAAAAGATCTTCTAAATCAAAAGAAATCAAAGAACAATCCAGAAGGTTCTGGAGAGTATAAGAGAGCGTCATTTGAACAACAAGTGCTACGTCGTTTTGATCATCCACTTTTGCCACGGTTGCGTGGTGTTTTCGAAACAGAGAAAATCGTTGGATTCGCCATTGATTATTGCCATGGCGGTAACCTCCATTCGCTCAGAAAGAAACAATCTGAGAAAATGTTCTCCAATGACGCCATTAGGTTTTACGCAGCTGAATTGGTTCTAGCATTGGAGTATCTTCATGAATTAGGAATAGTGTATAGAGATTTGAAGCCAGATAACGTGATGATTCAAGAAAACGGTCACATAATGCTAGTAGATTTCGATCTATCTACAAAGCTCAAACCTAAATCGCCACTTCAATCACTGAGTCAAGACTCGTCAGATAGATCTAATTCTTCGAAGGAGAAACACGCGAAGAAACGATTATTCTCGCCATTCTACAGATGTAACTCGGGGATCTCGCCGTGTGACTCGGATTTTGAATCGCAACAGAGTGTGAACTCAGAAAGGAAAAACAAGTTGGAATCAGTTGAAAAATCGAACTCGTTCGTTGGAACGGAAGATTACGTGGCACCTGAAATTGTAAACGGAAAAGGTCACGGTTTCGAAGTTGATTGGTGGTCGTTAGGTGTTGTTTTGTACGAAATGTTGTACGGAACGACGCCGTTTAATGGAATAAATAGAAAAGAAACGTTTTACAGGATTTTGTCAAAAGAACCTGAGTTAACTGGAGAGAAAACGGCGTTAAGGGATTTGATTAGGAGATTGTTGGAAAAGGATCCTGACCGTAGGATCAAGGGTCATGATTTCTTTAAAGGAGTAAAGTGGGACACGGTGTTGCAATTGGCAAGACCACCTTATATTCCTCCTTTGATTGAAGTTGAGAATGAGAAAACTGTGGGGTATAGTAAAAACTATGTGGAGGTATTTGTTCATGAGGTGTTTTTTCCCAAGGGTGATGATGATAATAATGAAGAAAAAAAGAATAATAAAATGGAAGTAAAGAAGGATAATAGTGAGGAAAAGAGGGTGTGGGTTGATAAGTTGAGTAGTAGTCTCAATGAGGATGATGATTTTTTAATTTTTTGA 1293 0.3968 MNSSENNQNSTVKSLDFNNLKVISAVGRGAKGVVFLATTGNQSSNECVALKVISKDLLNQKKSKNNPEGSGEYKRASFEQQVLRRFDHPLLPRLRGVFETEKIVGFAIDYCHGGNLHSLRKKQSEKMFSNDAIRFYAAELVLALEYLHELGIVYRDLKPDNVMIQENGHIMLVDFDLSTKLKPKSPLQSLSQDSSDRSNSSKEKHAKKRLFSPFYRCNSGISPCDSDFESQQSVNSERKNKLESVEKSNSFVGTEDYVAPEIVNGKGHGFEVDWWSLGVVLYEMLYGTTPFNGINRKETFYRILSKEPELTGEKTALRDLIRRLLEKDPDRRIKGHDFFKGVKWDTVLQLARPPYIPPLIEVENEKTVGYSKNYVEVFVHEVFFPKGDDDNNEEKKNNKMEVKKDNSEEKRVWVDKLSSSLNEDDDFLIF 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00308 430 FunFam Serine/threonine-protein kinase OXI1 246 358 - -
Trre15g00308 430 ProSiteProfiles Protein kinase domain profile. 20 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00308 430 SMART serkin_6 20 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00308 430 FunFam Serine/threonine-protein kinase OXI1 115 183 - -
Trre15g00308 430 Coils Coil 390 410 - -
Trre15g00308 430 MobiDBLite consensus disorder prediction 389 408 - -
Trre15g00308 430 Pfam Protein kinase domain 239 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00308 430 Pfam Protein kinase domain 22 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00308 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Trre15g00308 430 MobiDBLite consensus disorder prediction 184 206 - -
Trre15g00308 430 PANTHER FLIPPASE KINASE 1-RELATED 12 365 - -
Trre15g00308 430 Gene3D Phosphorylase Kinase; domain 1 20 114 - -
Trre15g00308 430 SUPERFAMILY Protein kinase-like (PK-like) 17 370 IPR011009 -
Trre15g00308 430 Gene3D Transferase(Phosphotransferase) domain 1 115 185 - -
Trre15g00308 430 Gene3D Transferase(Phosphotransferase) domain 1 244 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00308 Trre-Chr15 2116452 2117898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00308 13 430 AGC Kinase Gene Family AT3G25250 56.221 5.99e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre15g00308 Pkinase 2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00308 K20714 - gmx:100785773 536.569