Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00250 ATGGATGAAGATCAAGAGATGGAGAAATTCGGAATGGAGAACGATTTCGAAGGTGGCGAATGGGTTGGTGGTGAATTCTACTATCGAAAGCAAAGAGAGAAACGACACCAAACCAAAGAGGATGTTCTCTATGGAGTTTTTGCGGATTCCGAAGACGACGATGATGAGTATTCTAGTAGAAAGCGAAGAAAAGGCCGTGATTTTTCGAAGAAACAGGACCTCACTAAACCGGTGAATTTCGTTTCTACTGGAAATTTTATGCCTAATCAAGATAATGTTAATGAGAATTTGAAAGAAAAAGATGAGAGTGATAGCTATGTTGATGAAGATAGGCCTGGTTTAGGTGCAGGTCTTGGTTTTGGGTCTGCTAGCACGTCGGGGTCTGGCTTAGGTTTTAATTCTGGTCGTGCTGCTGTGAATGGTTCTCATAGGAATGATGAATCTGATGAGAATGATAATGGTGATGATAAATTTTTGCCTACTGAGTTTGGGAAGAAGCTTAAGGAGGGAGCAATGAGGAGGGAGAAGGAGAGATTGGAGAAGAAGAAGAAGGGGCAGAAGCAGAAGCCTGGTCTAGGTCAGGGGGGATCTGTGGATGTTGGGACTTTTGAGACTCATACGAAGGGAATTGGAATGAAGCTGCTGGAGAAGATGGGTTATAAAGGTGGTGGTCTTGGGAAGAATGAGCAGGGTATTTTGAATCCTATTGAGGCGAAATTAAGGGCTAAGAATTCTGGTCTTGGATTTAATGAACCAAAGAAGACTACAACGCCGTTGCCCGCTTTGCAGACTGAAAAGAAGAGTGCACTGGGAGGAGATGTGCAGCCAACAGTTGGAAGATCGAGAGAACGTTCATGGTTAAAGCAGTTGAAGAAAAAGAGAAAAGAAGAGTATGTAACTGCTGAAGAGTTGTTGGCGAGCAAGCAAGAAGAAGATTCAGAGGTTGTTCAGAAGATTTATGATATGCGGGGGCCGCAGGTACGAGTGTATACAAATTTGTCTGATTTGAATGCTGAGGAGAAAGCAAAGGAAGAGGATGTCCCAATGCCTGAGCTTCAGCATAACGTAGCACTAATAGTTCGTTTGGCTGAGGCTGACATCCAAGAGATTGATAGAGATTTGAGAAAAGAGAGGGATATAGCACTTAGCTTGAAAAAAGAAAAAGAGAACTTGGAAGCTGAGGCATCATTTCAAAAGAATCAGCTGGATAATTATGAGAAAATAATGAGTGTGCTGGGCCGAGTTGGAGAAGAGAACACCTTAGGAACATTAACATTGGATTCCCTTGCTCAATGCTTTAGAGACATGAACAAAAGATATCCTGAGGAATATAAGTTGTGTAACTTGTCATGCATTGCTTGTTCATATGCTCTACCTTTGTTTATCAGAGTGTTTCAAGGATGGGATCCTCTTCGAAATCCTTCTCATGGTTTGGAGTTGGTATCACAGTGGAAGGCATTGCTTCAAGGTGATGATTGTTTTGATATTTGGGACACATCGTCACCTTATACGCACTTGGTTTCAGAGGTTGTATTACCAGCTGTTAGAATATCTGGTATCAATACCTGGCATGCACGGGATCCTGAGCCGATGCTAAGGTTCTTGGAGTCATGGGAAAAATTGCTTCCTTCTTCAGTTCTTGCTACTATATTAGACAACATAGTCATGCCAAAACTATCAAGCGCCGTAGGTACTTGGGAACCACATCTTGAGACCATTCCTATCCACACATGGGTGCATCCATGGCTACCTTTGCTAGGGAACAAATTGGAGGGTATCTACCAGATGATTCGTTTCAAATTGAGTACTGTTCTTGATGCGTGGCATCCAAGTGATGGTTCTGCATATGCCATATTGTCCCCTTGGAAGACTGTATTTGATTCTGATAGTTGGCAACAACTTATGCACCGTTTTATTGTACCAAAGCTGAAGGCTGTATTTGTATCTGATGACTTTCAAGTGAACCCGGCAAGTCAGAAACTTGATCAGTTTAATTGGGTAATGAACTGGGCTTCAGCTATCCCAGTTCATCTGATGGTTGACACGATGGAGATATTCTTTACCAAGTGGCTTACAGTTTTGTATCGTTGGTTGTGCTCAAATCCTAACTTTGATGAAGTTACGAAATGGTATTTGGGCTGGAAAGATCTTATTCCCAAAGAACTTTTGGCAAATGAAATTATTCGATACAAGCTCAATTGTGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGGAGGTTGTGCAACCTGGTTTGAAGGAGAAGATAAGCTATATCAGAGTAAGTGAGCAGAGGAAATTTGAGACTCAGCAGAAAGCAGCGGCCTCTGCTCAACAACAGGCTTCTGTCAATGCAGATGGTGCGAATGAAATGAGCGTGAAAGAAATCGTTGAAGCCTATGCTCGGGATCATGGTTTACTGTTCAAACTTAAACCTGGTAGAATGCATAATGGCCATCAAATATATGGGTTTGGCAATGTCAGCATAATAATTGATTCTCTAAATCAAAGGATCTATGCCCAAAATGAGGAGACATGGTCTTTAGAAACTCTTGAGCGATTGCTAGAGTTACATAATAGATCTCTTAGTAAAAGACGCTGA 2604 0.419 MDEDQEMEKFGMENDFEGGEWVGGEFYYRKQREKRHQTKEDVLYGVFADSEDDDDEYSSRKRRKGRDFSKKQDLTKPVNFVSTGNFMPNQDNVNENLKEKDESDSYVDEDRPGLGAGLGFGSASTSGSGLGFNSGRAAVNGSHRNDESDENDNGDDKFLPTEFGKKLKEGAMRREKERLEKKKKGQKQKPGLGQGGSVDVGTFETHTKGIGMKLLEKMGYKGGGLGKNEQGILNPIEAKLRAKNSGLGFNEPKKTTTPLPALQTEKKSALGGDVQPTVGRSRERSWLKQLKKKRKEEYVTAEELLASKQEEDSEVVQKIYDMRGPQVRVYTNLSDLNAEEKAKEEDVPMPELQHNVALIVRLAEADIQEIDRDLRKERDIALSLKKEKENLEAEASFQKNQLDNYEKIMSVLGRVGEENTLGTLTLDSLAQCFRDMNKRYPEEYKLCNLSCIACSYALPLFIRVFQGWDPLRNPSHGLELVSQWKALLQGDDCFDIWDTSSPYTHLVSEVVLPAVRISGINTWHARDPEPMLRFLESWEKLLPSSVLATILDNIVMPKLSSAVGTWEPHLETIPIHTWVHPWLPLLGNKLEGIYQMIRFKLSTVLDAWHPSDGSAYAILSPWKTVFDSDSWQQLMHRFIVPKLKAVFVSDDFQVNPASQKLDQFNWVMNWASAIPVHLMVDTMEIFFTKWLTVLYRWLCSNPNFDEVTKWYLGWKDLIPKELLANEIIRYKLNCGLDMMNQAVEGMEVVQPGLKEKISYIRVSEQRKFETQQKAAASAQQQASVNADGANEMSVKEIVEAYARDHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQRIYAQNEETWSLETLERLLELHNRSLSKRR 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00250 867 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 1 855 IPR045211 GO:0000390
Trre15g00250 867 Pfam GC-rich sequence DNA-binding factor-like protein 426 694 IPR022783 -
Trre15g00250 867 Coils Coil 374 408 - -
Trre15g00250 867 Coils Coil 291 311 - -
Trre15g00250 867 MobiDBLite consensus disorder prediction 54 73 - -
Trre15g00250 867 SMART G-patch_5 205 250 IPR000467 GO:0003676
Trre15g00250 867 ProSiteProfiles G-patch domain profile. 207 252 IPR000467 GO:0003676
Trre15g00250 867 PIRSF TFIP11 1 862 IPR024933 -
Trre15g00250 867 MobiDBLite consensus disorder prediction 42 203 - -
Trre15g00250 867 Pfam G-patch domain 207 248 IPR000467 GO:0003676
Trre15g00250 867 MobiDBLite consensus disorder prediction 121 141 - -
Trre15g00250 867 MobiDBLite consensus disorder prediction 94 109 - -
Trre15g00250 867 MobiDBLite consensus disorder prediction 75 93 - -
Trre15g00250 867 Pfam Tuftelin interacting protein N terminal 4 106 IPR022159 -
Trre15g00250 867 Coils Coil 169 189 - -
Trre15g00250 867 MobiDBLite consensus disorder prediction 142 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00250 Trre-Chr15 1719723 1722326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00250 196 266 C2H2 Transcription Factor Family AT5G26610 40.845 9.20e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00250 K13103 - gmx:100781621 1300.8