Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00249 ATGGAGAAAAAAATCATAGAACACAAAACTGTTACGAAAAAGCTTGTGAAACCTGGTTTCATGTCTTCTTTCATTCCAAAAACAATTAGAGTCACAGTTACTGATAATGATGCCACTGATTCTTCAAGTGAAGATGAAGGTTTCAAGAATGGTTTTCTTCAAAAAATAACAAGAAAATCAGTGAAAGAGATAAGGTTTCAAGAATGTTCTACTCTTTATGCAAACAAGAACAACAAAAAGAAACAACAGAATGGTGAATGTTGTTTGAAACAGAACAATGATAAGGATAAAGATACAAACAATGTTGTTCATCAGAAATTTCGCGGGGTTAGGCGTCGACCGTGGGGGAGATGGGCGGCCGAGATTCGCGATCCTTGGCTTCGAAGGAGAAAATGGTTAGGTACTTTTGATACTGCTGAAGAAGCTGCTTTGGTTTATGATAGGGCTGCAATTGATTATAGAGGTGCTGATGCTATTACAAATATTATCAAACCGCCACAAAAACATCAACAACAACAAGAACAAGAACAGAATGTTTGTGACAAAAATGTTGTTAATGATTGTGTTGAGTGTGATGATGATAACAACAAAGAAGAAGAATGTAATGGTAGTTCATCTTGTTCATCTGGTATTGAAATTTGGAGTAAAAAGATGAATGATCAAGAATGGATTAAAGAGATAAGTGGAGAGAAATATTTGGATTTGGATGATGGTTTTATGTTTGATGATTCATTTGGTTCTTATAATGAACCTTTTATTACTACAATGGTTTCTGAGGAGAGTGAATGCATTATTGATAATATTCCTTTTCATCTTGAAGAAGATTTTGAATCATGTAAATGGGAAGTTGATAATTATTTCAATGACCCTTTTTCAATGCATTGA 885 0.339 MEKKIIEHKTVTKKLVKPGFMSSFIPKTIRVTVTDNDATDSSSEDEGFKNGFLQKITRKSVKEIRFQECSTLYANKNNKKKQQNGECCLKQNNDKDKDTNNVVHQKFRGVRRRPWGRWAAEIRDPWLRRRKWLGTFDTAEEAALVYDRAAIDYRGADAITNIIKPPQKHQQQQEQEQNVCDKNVVNDCVECDDDNNKEEECNGSSSCSSGIEIWSKKMNDQEWIKEISGEKYLDLDDGFMFDDSFGSYNEPFITTMVSEESECIIDNIPFHLEEDFESCKWEVDNYFNDPFSMH 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00249 294 CDD AP2 105 161 IPR001471 GO:0003700|GO:0006355
Trre15g00249 294 SMART rav1_2 106 169 IPR001471 GO:0003700|GO:0006355
Trre15g00249 294 Pfam AP2 domain 106 155 IPR001471 GO:0003700|GO:0006355
Trre15g00249 294 SUPERFAMILY DNA-binding domain 106 162 IPR016177 GO:0003677
Trre15g00249 294 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 217 - -
Trre15g00249 294 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Trre15g00249 294 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Trre15g00249 294 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Trre15g00249 294 Gene3D AP2/ERF domain 105 163 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00249 Trre-Chr15 1713147 1714031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00249 4 176 AP2-EREBP Transcription Factor Family AT4G27950 43.169 4.83e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g00249 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00249 - - tpra:123886940 422.935