Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00233 ATGAAATTGCGCGATCTCTTGAAGGCTACTAACAACTTCAGTAATAGCAATATCATTGGGACAGGAAGAACAGGAACTGTTTACAAAGCTACTCTTGAGGACGGCACGGCATTTATGGTGAAAAGATTGCAGGAATCGCAACACTCTGAGAAAGAATTTATGTCTGAGATGGCGACACTAGGGAGTGTCAAACATCGTAATCTTGTTCCTCTTTTAGGTTTTTGCGTGGCCAAAAAGGAGAGGCTTTTGGTCTTTAAAAACATGCCGAATGGAATGCTCCATGATCACCTACATCCGGCTGTTGGCGAGTGCACCCTTGACTGGCCTTCAAGACTCAAAATTGCAATCAGTGCGGCCAAAGGATTAGCGTGGCTTCATCATAGCTGCAATCCCTGTATCATCCACCGAAACATAAGCTCTAAGTGCATCTTGTTAGACGAAGACTTTGAGCCCAAAATTTCCGATTTTGGCCTTGCCAGATTGATGAATCCACTCGCTACACATTTAAGTACTTTGATAAATGGTGAGTTCGGCGATTTTGGTTATGTGGCTCCTGAGTATGCAAAAACACTAGTCGCTACGCCTAAGGGCGATGTTTACAGTTTCGGGACAGTGCTTCTTGAGTTGGTGACGGGCGAAAGACCTGCAAATGTGGCTCTTCAAACTTTTAAAGGAAATCTCGTGGAATGGATTGCAGAGCTTACAAACAACTCGGAACTCCACAATGCCATTGACGAATCACTAGTTGACAAGAGCAACGATAATGAGCTCTTCCCATTTTTAAAGGTTGCATGCAACTGTGTCTCACCATCTCCAAAGGAGAGGCCAACCATGTCTGAAGTGTATCAGTTATTAAGAGCTATTGGTGATAGGTACAATTTCACAACCACAGATGAAATATTGGTACCTGAAGATATTCACGATAATACCATGGAGGAACTTATTGTTGCCAGAGAAGGATAA 963 0.432 MKLRDLLKATNNFSNSNIIGTGRTGTVYKATLEDGTAFMVKRLQESQHSEKEFMSEMATLGSVKHRNLVPLLGFCVAKKERLLVFKNMPNGMLHDHLHPAVGECTLDWPSRLKIAISAAKGLAWLHHSCNPCIIHRNISSKCILLDEDFEPKISDFGLARLMNPLATHLSTLINGEFGDFGYVAPEYAKTLVATPKGDVYSFGTVLLELVTGERPANVALQTFKGNLVEWIAELTNNSELHNAIDESLVDKSNDNELFPFLKVACNCVSPSPKERPTMSEVYQLLRAIGDRYNFTTTDEILVPEDIHDNTMEELIVAREG 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00233 320 Gene3D Transferase(Phosphotransferase) domain 1 88 306 - -
Trre15g00233 320 CDD STKc_IRAK 19 285 - -
Trre15g00233 320 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 290 - -
Trre15g00233 320 Pfam Protein tyrosine and serine/threonine kinase 16 284 IPR001245 GO:0004672|GO:0006468
Trre15g00233 320 Gene3D Phosphorylase Kinase; domain 1 1 86 - -
Trre15g00233 320 SUPERFAMILY Protein kinase-like (PK-like) 4 285 IPR011009 -
Trre15g00233 320 ProSiteProfiles Protein kinase domain profile. 13 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g00233 320 FunFam Leucine-rich repeat receptor-like protein kinase 88 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00233 Trre-Chr15 1584229 1585191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00233 1 295 Receptor kinase-like Gene Family AT1G27190 51.342 4.33e-107 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Trre15g00233 PK_Tyr_Ser-Thr 6.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00233 - - psat:127076602 566.614