Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00216 ATGGGAGTAGGAAGAGAAATCCTGAAGGAAAAAAGCGATCTTGAGATTGCTGTGAGTGAAAAAAGAAGAAAGCCTGGGTATCGTGTGACTAAGCAAATTGATCCTTATACTAAGCAAAGATCTCTTCTTTTTAAGTTTGATTATCCTGAGATTGAAGGCATCGCAAAGCCTAGGCATCGATTTATATCCTCCTATGAGCAGAGGGTGCAACCATTTGATAAAAGATACCAGTATCTCTTGTTTGCAGCTGAACCTTATGAAACAATTTCTTTCAAGGTACCGAGCACAGAGCACGTCTGCTCTAAAGTTTTTCTCGCCGTCAATTTCCGGGTTGAGGGACTTCATCCAACCCAACGTGGTCAAAGGAATGGTTCTCTTGAACCAAAACGATGTTTTGATGGTTTAGCTATGAATAATGTTGGAATATGA 429 0.4033 MGVGREILKEKSDLEIAVSEKRRKPGYRVTKQIDPYTKQRSLLFKFDYPEIEGIAKPRHRFISSYEQRVQPFDKRYQYLLFAAEPYETISFKVPSTEHVCSKVFLAVNFRVEGLHPTQRGQRNGSLEPKRCFDGLAMNNVGI 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00216 142 SMART CactinC_cactus_3 11 118 - -
Trre15g00216 142 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 24 99 IPR031781 -
Trre15g00216 142 Gene3D - 5 106 - -
Trre15g00216 142 PANTHER SPLICING FACTOR 3A SUBUNIT 2 9 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00216 Trre-Chr15 1480922 1483662 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00216 11 97 C2H2 Transcription Factor Family AT2G32600 67.816 8.16e-36 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00216 K12826 - cave:132161723 137.117