Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00208 ATGGACCCTCAATTTTCTAATAATAATGGTACTACAAACAATGAGGCTGAAGACCCCTTAGTTATGGAATTACCACCAGGTTACAAATTCATCCCTGATGATGTTGACTTAATTGATTATTATTTGAAGTATAAGTTAGCTGGTTTTCTCATAAATCCACCAAGAATTAAAGATATTGAAGTTTACAAATATTCTCCTCAAGAATTAGAAAAATACCATAAATTCAAAGGAGAGAAAGAAATGTATTTTTTTACTCGAAGAAGCAAGAAATATAAAGAGGGAAGTCGTCCAAATCGGGATGTTAAGAACCAGGACGGTATTCATCTAGGTTTTTGGAAGGCTACTGGAAAAGAAAATTCAGTGATGAATAATGATATTGAAGTTGGATTTAAAAGAACTTTAGTCTATTACATAGGAAAGCAAGACAAACCTAAACAAGAAAAGTCTAATGAGTCAATAAAAACCAATTGGATCATGCAAGAGTTTAGAATTAAAGATCTTACAAGTTCAAGTGCAACTCCTCCTAATATGGATGATTGGGTTTTATGCAAAATTTATGAGCATCAATATGGAATGAAGAAATCTCAAATGGAAGGTCAAAACAACAAACAAGTGACAATAACTGTTGCTCCACAATGCCAACAACTCAATCAATATCATCAAACTCAATGCATGCAATCTTCCTTGTCACCAAATATGGTTGATAACTCACAATTTCAATTCAATCAATATTCTCAAGTTCAAAAAATGCAAGATGATTCGTCAAAATACGTAGCGGTTTCGTGTCAACCTAATCAATGTTCAGAGTCGCAACCAAACGAAGTTTCCTCATCATCAAACATGATTGGTATTACACAATGTCAACCCAATCAACATGATGATGCTCAACAAATGCAAGTTTCTTCATCATCAAACATGAATGCCGCGCCCCAATATCATTCCAATCAATATCCTCAGGCTCAACCAAATCAAGGTTGTTTCTTAGCCGATTACAACTCGCAATATCTATCCAACCAACATTTTCAAGATCAACAAACAAATGTTTTTCTATCAACAAACGAGGTCTACGATTCACAATATTTACGTAATCAACATTCTCAGGATCAACAAATGCAAGATTCTCAAATGGAAGACGATTATATATTGCAGTTAATAAACTTAGATGATAAAGATTCATATGTTAATTATTTTGAAGAAGCTTAA 1203 0.3317 MDPQFSNNNGTTNNEAEDPLVMELPPGYKFIPDDVDLIDYYLKYKLAGFLINPPRIKDIEVYKYSPQELEKYHKFKGEKEMYFFTRRSKKYKEGSRPNRDVKNQDGIHLGFWKATGKENSVMNNDIEVGFKRTLVYYIGKQDKPKQEKSNESIKTNWIMQEFRIKDLTSSSATPPNMDDWVLCKIYEHQYGMKKSQMEGQNNKQVTITVAPQCQQLNQYHQTQCMQSSLSPNMVDNSQFQFNQYSQVQKMQDDSSKYVAVSCQPNQCSESQPNEVSSSSNMIGITQCQPNQHDDAQQMQVSSSSNMNAAPQYHSNQYPQAQPNQGCFLADYNSQYLSNQHFQDQQTNVFLSTNEVYDSQYLRNQHSQDQQMQDSQMEDDYILQLINLDDKDSYVNYFEEA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00208 400 PANTHER NAC TRANSCRIPTION FACTOR 56 22 250 - -
Trre15g00208 400 Gene3D NAC domain 34 192 IPR036093 GO:0003677|GO:0006355
Trre15g00208 400 SUPERFAMILY NAC domain 20 186 IPR036093 GO:0003677|GO:0006355
Trre15g00208 400 Pfam No apical meristem (NAM) protein 25 164 IPR003441 GO:0003677|GO:0006355
Trre15g00208 400 ProSiteProfiles NAC domain profile. 24 188 IPR003441 GO:0003677|GO:0006355
Trre15g00208 400 MobiDBLite consensus disorder prediction 290 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00208 Trre-Chr15 1442121 1444771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00208 18 194 NAC Transcription Factor Family AT3G15500 41.011 5.16e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre15g00208 NAM 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00208 - - tpra:123886946 494.197