Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00164 ATGGCTTCCACATTTCTCACCATACCAACTCCCTTCCTTCACAAAACCACCACCGCTTCTTTCTCTAACCAAAGACTCCCACTTTTGAAGAGGAACTCTTTGAAGGTCAATGCAATTGCCAAGAAATGGGAACCCACTAAGGTTGTGCCTCAGGCTGATAGGGTTCTTATTCGTTTGGAGGAGCTATCACAACAAACAGCTGGCGGAATTTTGTTGCCCAACTCAGCTGTTAAATTTGAGCGATATCTTGTTGGAGAAGTCCTAAATGTTGGTTCTGAGGCTGAAAATGTGAAGGCCGGAGCAAAGGTTCTATTCAATGACGTAAATGCTTATGAGGTGGATTTGGGGACTGATGCAAAGCACGTCTTCTGTAAATCAAGCGACTTGTTGGCCGTGGTTGAGTAG 405 0.4494 MASTFLTIPTPFLHKTTTASFSNQRLPLLKRNSLKVNAIAKKWEPTKVVPQADRVLIRLEELSQQTAGGILLPNSAVKFERYLVGEVLNVGSEAENVKAGAKVLFNDVNAYEVDLGTDAKHVFCKSSDLLAVVE 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00164 134 SMART Cpn10_2 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g00164 134 Pfam Chaperonin 10 Kd subunit 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g00164 134 Gene3D GroES chaperonin 43 134 IPR037124 GO:0006457
Trre15g00164 134 SUPERFAMILY GroES-like 47 134 IPR011032 -
Trre15g00164 134 CDD cpn10 47 133 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g00164 134 PANTHER 10 KDA HEAT SHOCK PROTEIN 46 132 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trre15g00164 134 FunFam 10 kDa chaperonin 43 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00164 Trre-Chr15 1165953 1168732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00164 1 134 Calmodulin-binding Proteins AT5G20720 28.846 4.12e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00164 K04078 - gmx:100306026 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00164 15 1165953 1168732 Trre15g00164 15 1165953 1168732 ECH