Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00159 ATGGATACAGATACAGTTACACCACCGTCACCGTCATCGTTACAAAACATAAGTCCCAGCATTCTCATCATTGTTATAGTTCTCGCCGTCACCGTCATAGTTTCCTTCGCAATCTGTTTCCTTCTCCGTCACCTCAACCGTAACTGTCTCCGCCGTCTCATCGCCGATCCATCACCAACAACAACCATAACCATCGAATCATCACCTCACAGTAACCGAATCTCGCCGGAGATCGTACCTCCTTCAGTTATCGATTCACTTCCTCTCTTCACATACTCCTCCATTTCTCGCCGTTCATCCGCCGTCACCGCCGCTGACTGTGCCGTTTGTCTCTCGAAGTTCCGTAGCAACGACCTCCTCCGTTCTCTTCCTCTATGTTGTCACGCATTCCACGCCGAATGTATCGACACTTGGCTCCGTTCAAATCTCTCATGTCCTCTTTGTCGTTCCTCCATTTTCCCTTCCGATTACGACCTCGCGAAAATTCTCCGATCAACTTCCTCAGACAGTTTCCGAGTCGAAATCGGAAATGTAAGCCGGCGAGGAACAAATTCAACCAATCCAGAACTCTCCGGTGGAGGTGACTCGAGGTCCTATTCTATTGGATCATTCGATTATTATGTGGTTGAACCATCGGAAGTTCCGTTCAGTCAAGATCACCGGAGAAGCATTTCCGATCAGAAGGAAATTCACATTCCGATTTCAGAGGATTCTTCTGTTGTAACTGTCGCCGGTGAAGTTTCCAGCAGTGGACATTGGTTGAAGGATTACGTGGACAGGCTTTCGGCTACTATTTCATCGAGAACGGCGTCGTTTCGAAGCTCAGGAAGATTCTTCGGCGGTGGAGGAAGTAGTCGGAGAATCGAGCCAGTTGACTATGATGTTGAAGGTGATAGAATTGGTGAAGAAATTAGCGAGATGTTTCGATGGCTTTCAGGGGTATGA 945 0.4804 MDTDTVTPPSPSSLQNISPSILIIVIVLAVTVIVSFAICFLLRHLNRNCLRRLIADPSPTTTITIESSPHSNRISPEIVPPSVIDSLPLFTYSSISRRSSAVTAADCAVCLSKFRSNDLLRSLPLCCHAFHAECIDTWLRSNLSCPLCRSSIFPSDYDLAKILRSTSSDSFRVEIGNVSRRGTNSTNPELSGGGDSRSYSIGSFDYYVVEPSEVPFSQDHRRSISDQKEIHIPISEDSSVVTVAGEVSSSGHWLKDYVDRLSATISSRTASFRSSGRFFGGGGSSRRIEPVDYDVEGDRIGEEISEMFRWLSGV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00159 314 CDD RING-H2_EL5-like 106 149 - -
Trre15g00159 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 218 - -
Trre15g00159 314 FunFam E3 ubiquitin-protein ligase ATL6 68 155 - -
Trre15g00159 314 SMART ring_2 107 148 IPR001841 -
Trre15g00159 314 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Trre15g00159 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Trre15g00159 314 Pfam Ring finger domain 106 149 IPR001841 -
Trre15g00159 314 SUPERFAMILY RING/U-box 83 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00159 Trre-Chr15 1147454 1148398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00159 70 153 C3H Transcription Factor Family AT3G18930 49.451 3.31e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00159 K10663 - gmx:100817751 320.857