Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00153 ATGTTCCGCCGCGCTACATCTACTTTCCTCTCTCGCGCCGCCGCTACTCGCAGATTCTCAACCGATGTGGCTACCCCCGCCGCTGATTCTGCTTTCCATGAAGCTTGGAGGAAAGTTAGCCCCAATCTAGACCCACCAAAGACACCTCTCGAATTCCTCAAAGCTCGTCCTCCAGTTCCTTCTACGCTTCCTACTAAACTCACTGTCAATTTCGTTCTTCCTTATTCTTCTCAATTGGCCGCTAAAGAGGTTGATATGGTTATAGTCCCAGCTACAACTGGCCAGATGGGTGTTCTCCCAGGACATGTCCCAACAATTGCTGAGTTGAAACCTGGGGTCCTGTCTGTACATGAAGGGAATGACACAACCAAGTATTTTGTAAGCAGTGGCTTTGTCTTCATCCATGCAAACTCTGTTGCTGATATTATCGCTGTTGAGGCTGTCCCAGTGGATCAAATTGATGCAAGCCTAGTGCAGAAGGGTCTTCAAGAGTTCACTCAGAAGCTCAACTCAGCATCAACTGACTTGGAGAAAGCTGAAGCCCAGATTGGAGTTGATGTGCATAGCGCTCTCAACTCAGCTCTTACGGGCTAA 594 0.4865 MFRRATSTFLSRAAATRRFSTDVATPAADSAFHEAWRKVSPNLDPPKTPLEFLKARPPVPSTLPTKLTVNFVLPYSSQLAAKEVDMVIVPATTGQMGVLPGHVPTIAELKPGVLSVHEGNDTTKYFVSSGFVFIHANSVADIIAVEAVPVDQIDASLVQKGLQEFTQKLNSASTDLEKAEAQIGVDVHSALNSALTG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00153 197 FunFam ATP synthase delta 56 153 - -
Trre15g00153 197 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 67 139 IPR020546 GO:0015986
Trre15g00153 197 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 67 148 IPR036771 -
Trre15g00153 197 Coils Coil 162 182 - -
Trre15g00153 197 CDD F1-ATPase_delta 67 190 IPR001469 GO:0015986|GO:0045261|GO:0046933
Trre15g00153 197 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 29 197 IPR001469 GO:0015986|GO:0045261|GO:0046933
Trre15g00153 197 NCBIfam ATP synthase F1 subunit epsilon 78 182 IPR001469 GO:0015986|GO:0045261|GO:0046933
Trre15g00153 197 Gene3D - 154 196 - -
Trre15g00153 197 Gene3D - 56 153 IPR036771 -
Trre15g00153 197 FunFam ATP synthase subunit delta 154 196 - -
Trre15g00153 197 Hamap ATP synthase epsilon chain [atpC]. 65 185 IPR001469 GO:0015986|GO:0045261|GO:0046933
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00153 Trre-Chr15 1043480 1046401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00153 1 197 Primary Pumps ATPases AT5G47030 69.268 6.86e-101 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00153 K02134 - gmx:100780778 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00153 15 1043480 1046401 Trre15g00153 15 1043480 1046401 ECH