Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00123 ATGCCTCCGAAGACGACGAAAAGAGGGGCGGCGGCCAGTGGTGCGAAGAGAGGCGGCCGAGCACCGAGAGGGACATCTAAGGCTGCACAGAATCAACAGCAGCAACCTGAACCTGTGGAGGAGAAGGCGGTGATTGAGGAGGAGGAGAATCCTGTTGTTGAGGAAAAACCTGTGGTGGAAGAGAATCCTGTTGAAGATAAAGCTATTGATATGAATGAAATTGCTCCTGAGGCTGCTGCAGAAGAGGCCAAGACGGTGAAAAAAGATGAAGAGGAGGTTAAGGAGTCAATAGATGAATATGAGAAAGATGAACGACTAGATTTGGAGGATCATGATCCTGAGTATGAACCTGAGGAGTATGGTGCGGTTGATTATGATGAGAAGGAAATTGAGCAGGAAGAGGGTCATGAGGTGGGAGATGAAGTTGAGGAAGAAGCTGAAGATAATGTTGGTGAAGAAGAAGGTGATTCAGGTGAGGAAGAAGTAGAAGATGGCCATGATGAAATTGAGGGTGAAGAGGATGATGAGCATGCTGATGAGGAGCATGAGCATGCAGAGATGGCTGATGTGGAAGAAGAGGAACACCGTGAAGTTGTGAAGGAGAGGCGAAAGCGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACCGAAGATGATCTGAGGAAGGTTTTCAGTGAAGTTGGGGTTGTGACTGAGGTCAGGCTAATGATGAATCCTCAGACGAGAAAGAACAAGGGATTTGCATTCTTGCGGTTTGAAAATGTGGAACAAGCAAAACGAGCTGTAGAGGAGCTTAAAAATCCAGTGATTAATGGAAAACAATGCGGTGTTACTCCAAGTCAGGACAGTGATACCCTTTATTTGGGAAACATATGCAAGACATGGACAACGGAAGCCTTAAAGGAGAAGTTGAAGCATTATGGAGTTACAAATGTTGAGGATATAACTTTGGTAGAAGATTCTAATGATAAAGGAACAAACCGTGGGTTTGCATTCTTGGAATTTTCCTCTCGTTCAGATGCAATGGACGCCTTTAAGAGACTGCAGAAGAGGGATGTTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGATCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTCTCGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAGTCTTCTCAAGAAATATGGTGAAGTTGAAAAGATTGAGCTTGCTAGGAACATGCCAGCTGCTCGTAGGAAGGACTATGGATTTGTTACCTTTGGTTCACATGATGCTGCTATCAGATGTGCTGAGAGCATCACTGGTACAGAATTGGGTGAAGGTGACAAGAAGGCAAAAGTGAGGGCTAGGTTATCAAGGCCTCTTCAGAGAGGCCGTGGAAAACATGTTGGTCGTGGGGACTACCGCCCTGGCCGTGGACCTGCAATAATGTCGAGGCCTTCTTGGAGCCGACCTGCACCCCGTAGTTTTTCTTCGCGCGGGGTAAGAGGAATTGGAAGTCGTGCTCTGCCGCCAGTGAGGCCTATTAGTGCTAGAGATAGACGCCCTGTCATGTCTGTACCAGTTAGAAGTAGGCCACTACCTCCTCCAGCTAGATCTTATGATAGAAGACCAGCTGCTGCTGCATATTCAAAAAGTAGTGTGAAGAGAGATTATGGTCGGCGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGAATATGGATCAAGGATGGCCTCTGAAAGACGTCCATCATATAGGGATTATCCTCCCCGTGGATCTGACTACTCCGATCTCCCTAGAAGTACAGCTCGTGCTGCACCAAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTATGAGAGGCCTCCTCCTCCACCTGCCCCCCATTCAAGTTATCGTGAAGGGCGCCCTCGTGATTATGATGCTATATCTGGCTCAAAACGTTCTTATGCTGCCGTGGATGATGTTCCCCCGCGATACGCCGAATCTGGTGCTCGCCAATCAAGAGCTCGATTGGAATATGACTATGGTGGCAGTGCTTCACAGTATGGTGACACTTACGGTGATAGAGTTGGGAGATCTAGTCTTGGGTATGGTAGTGGCAGCCGAAGTTCTATATCTGGTCAAGATTCACATGGGATGTATAGCAGTCGGCAAGGGATGAGTTATGGTGGAGGCTCTTATGGTGGTAGTGACGCTGGAGGCATGTACTCATCAAGTTATGGCGGCGATTATGTTTCTCGTGGAAGTGATGTTGGCGGCAGCTCATATTCATCAATGTATTCTGGTAGGGGTGCGGGTGGCGGTAGTAGCAGTTACATGGGCAGTGGTGGATCGGGGTCTTATTATTGA 2382 0.4723 MPPKTTKRGAAASGAKRGGRAPRGTSKAAQNQQQQPEPVEEKAVIEEEENPVVEEKPVVEENPVEDKAIDMNEIAPEAAAEEAKTVKKDEEEVKESIDEYEKDERLDLEDHDPEYEPEEYGAVDYDEKEIEQEEGHEVGDEVEEEAEDNVGEEEGDSGEEEVEDGHDEIEGEEDDEHADEEHEHAEMADVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTRKNKGFAFLRFENVEQAKRAVEELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTTEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDKPAKVSFADSFIDPGDEIMSQVKTVFLDALPPSWDEDYVRSLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPGRGPAIMSRPSWSRPAPRSFSSRGVRGIGSRALPPVRPISARDRRPVMSVPVRSRPLPPPARSYDRRPAAAAYSKSSVKRDYGRREDLPPPRSRVAAEYGSRMASERRPSYRDYPPRGSDYSDLPRSTARAAPRRGYVDDGYSQRYERPPPPPAPHSSYREGRPRDYDAISGSKRSYAAVDDVPPRYAESGARQSRARLEYDYGGSASQYGDTYGDRVGRSSLGYGSGSRSSISGQDSHGMYSSRQGMSYGGGSYGGSDAGGMYSSSYGGDYVSRGSDVGGSSYSSMYSGRGAGGGSSSYMGSGGSGSYY 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00123 793 Gene3D - 375 491 IPR012677 -
Trre15g00123 793 MobiDBLite consensus disorder prediction 766 793 - -
Trre15g00123 793 Gene3D - 122 288 IPR012677 -
Trre15g00123 793 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 35 793 - -
Trre15g00123 793 SUPERFAMILY RNA-binding domain, RBD 203 286 IPR035979 GO:0003676
Trre15g00123 793 Gene3D - 289 371 IPR012677 -
Trre15g00123 793 MobiDBLite consensus disorder prediction 80 109 - -
Trre15g00123 793 SMART rrm1_1 209 282 IPR000504 GO:0003723
Trre15g00123 793 SMART rrm1_1 386 461 IPR000504 GO:0003723
Trre15g00123 793 SMART rrm1_1 289 368 IPR000504 GO:0003723
Trre15g00123 793 FunFam Heterogeneous nuclear ribonucleoprotein Q 289 371 - -
Trre15g00123 793 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Trre15g00123 793 MobiDBLite consensus disorder prediction 707 728 - -
Trre15g00123 793 Coils Coil 83 106 - -
Trre15g00123 793 MobiDBLite consensus disorder prediction 561 575 - -
Trre15g00123 793 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 372 IPR000504 GO:0003723
Trre15g00123 793 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 141 288 - -
Trre15g00123 793 CDD RRM_SF 210 281 - -
Trre15g00123 793 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Trre15g00123 793 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 387 452 IPR000504 GO:0003723
Trre15g00123 793 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 356 IPR000504 GO:0003723
Trre15g00123 793 CDD RRM_SF 387 461 - -
Trre15g00123 793 MobiDBLite consensus disorder prediction 181 198 - -
Trre15g00123 793 FunFam RNA recognition water-stress protein1 375 496 - -
Trre15g00123 793 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 385 467 IPR000504 GO:0003723
Trre15g00123 793 MobiDBLite consensus disorder prediction 1 198 - -
Trre15g00123 793 MobiDBLite consensus disorder prediction 110 180 - -
Trre15g00123 793 MobiDBLite consensus disorder prediction 704 728 - -
Trre15g00123 793 MobiDBLite consensus disorder prediction 466 652 - -
Trre15g00123 793 MobiDBLite consensus disorder prediction 45 72 - -
Trre15g00123 793 SUPERFAMILY RNA-binding domain, RBD 287 452 IPR035979 GO:0003676
Trre15g00123 793 CDD RRM_SF 290 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00123 Trre-Chr15 859112 862984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00123 210 489 Eukaryotic Initiation Factors Gene Family AT4G34110 23.102 2.11e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00123 - - aprc:113850151 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00123 15 859112 862984 Trre15g00123 15 859112 862984 ECH