Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00090 ATGGATGCTACAATATTTATGTCTAGTGATTTCCCTTCATTTGAATCTCTTCAAATTCAAAACAACTTGTTTGATCTTGAACTTGAACACCCTTTCATCATGGAAGCTGCTGATTCCAACCATCAAATGTCTGATTCATCCTTGTACGGTTCATTTCCCAGTCCCGTGTTACTAGATTCTAATGTCAACCACGACGCGTGTCAAATCGGATCATCAACAGCTTCGTGTAAACCTCGCGTGCCTGTACCGGAATGGAAGCGATATAGAGGCGTGAGGCGAAGGCCATGGGGCAAATTTGCCGCCGAGATAAGGGATCCAAAAAAGAATGGATCTAGAGTTTGGCTTGGAACTTACAAAACCGAAGAAGAAGCTGGTTTGGCTTACGATAGAGCTGCTTTCAAGATGCGTGGTAGAAAAGCCAAGCTCAATTTTCCACACCTCATCGGCTCTGATTTGCCGATGGAGCCGATTATAGTGGTGGAAGCTTCGGAGAAGAGCCCGCAGGAAGCTAATTCGGATTCCTCGGGAGGGATAATAAAGAAGAGGAAGAACTTAGTTGATGTATTGAATAGGTTAGCTAATATTAAAAGACAATTATGTGGAGGATTTGAAATAGGTTTAGGGGTTGATGATGTTCATGTTCATCAATGGCTGAATGATTCTGTACTGTAA 672 0.4271 MDATIFMSSDFPSFESLQIQNNLFDLELEHPFIMEAADSNHQMSDSSLYGSFPSPVLLDSNVNHDACQIGSSTASCKPRVPVPEWKRYRGVRRRPWGKFAAEIRDPKKNGSRVWLGTYKTEEEAGLAYDRAAFKMRGRKAKLNFPHLIGSDLPMEPIIVVEASEKSPQEANSDSSGGIIKKRKNLVDVLNRLANIKRQLCGGFEIGLGVDDVHVHQWLNDSVL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00090 223 ProSiteProfiles AP2/ERF domain profile. 87 145 IPR001471 GO:0003700|GO:0006355
Trre15g00090 223 FunFam Ethylene-responsive transcription factor 2 86 146 - -
Trre15g00090 223 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Trre15g00090 223 PRINTS Ethylene responsive element binding protein signature 127 147 IPR001471 GO:0003700|GO:0006355
Trre15g00090 223 SMART rav1_2 87 151 IPR001471 GO:0003700|GO:0006355
Trre15g00090 223 Pfam AP2 domain 87 137 IPR001471 GO:0003700|GO:0006355
Trre15g00090 223 SUPERFAMILY DNA-binding domain 87 146 IPR016177 GO:0003677
Trre15g00090 223 CDD AP2 86 147 IPR001471 GO:0003700|GO:0006355
Trre15g00090 223 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Trre15g00090 223 PANTHER DNA-BINDING DOMAIN 72 168 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00090 Trre-Chr15 643990 644661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00090 12 187 AP2-EREBP Transcription Factor Family AT2G44840 44.886 5.41e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g00090 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00090 K09286 - gmx:100527194 197.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00090 15 643990 644661 Trre15g00090 15 643990 644661 ECH