Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00070 ATGGGTGAGAAAGATGATGAGTTTAGTTTGGGTTTAGGTTTGAGTTTAAGTTTAGGATGTGGAGATTATGCAAAAAATAATAATCAAATTCCTTTGAAGGTGAATCACATGCAAAAGCCACCTCAATCAGTTCCAAACCAAAGGGTTTCATTCAACAACTTGTTCCATACACATGATCTGAGTACCGAAACGAGGTCGTTTCTCCGCGGAATAGACGCAAACTCGCCGCATGCATCTGCTCCGGCGGCAGCGGCGTTCGAAGATGAGAACGGAGTTTCTTCTCCAAACAGCACCGTATCAAGTATCAGTGGAAAGAGAAGTGAAAGAGAAGGTAATGGAGACGAAAACGACGGTGTTGAGAGAGCTTCGTGTTCACGTGGTGGTGGAAGTGATGACGATGACGGCGGAGGTTGCGGCGGCGATGGTGATTCTTCAAGGAAGAAGCTGAGGTTGTCAAAGGAACAGTCAATGTTGCTTGAAGAAACTTTCAAGGAGCATAATACACTGAATCCGAAACAAAAGCAAGCATTGGCTAAGCAATTGAATCTGAAGCCAAGACAAGTGGAGGTGTGGTTTCAAAACAGACGAGCAAGGACCAAGTTGAAGCAGACTGAAGTGGATTGCGAATACTTGAAGAGATGCTGTGAGACTCTGACTGAAGAAAATAGAAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGTTATCTCCACAACTCTACATGCAAATGAATCCTCCCACCACTCTTACAATGTGCCCTTCGTGCGAGCGTGTTGCTGTATCATCTGCATCCTCCTCGTCAGCAGCTGCACCCTCTGCTCCAGCTCCAGCTGACTGCAACCCGCCAGGCTCGAGTGTTCAGCGGCCAGTACCTCTCAACCCTTGGGCTGCAATGTCTAGTCAAAACCGTACCCGGCCATGA 927 0.4714 MGEKDDEFSLGLGLSLSLGCGDYAKNNNQIPLKVNHMQKPPQSVPNQRVSFNNLFHTHDLSTETRSFLRGIDANSPHASAPAAAAFEDENGVSSPNSTVSSISGKRSEREGNGDENDGVERASCSRGGGSDDDDGGGCGGDGDSSRKKLRLSKEQSMLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSASSSSAAAPSAPAPADCNPPGSSVQRPVPLNPWAAMSSQNRTRP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00070 308 MobiDBLite consensus disorder prediction 79 148 - -
Trre15g00070 308 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Trre15g00070 308 SMART HOX_1 144 206 IPR001356 GO:0003677
Trre15g00070 308 CDD homeodomain 146 203 IPR001356 GO:0003677
Trre15g00070 308 MobiDBLite consensus disorder prediction 265 308 - -
Trre15g00070 308 Pfam Homeobox associated leucine zipper 202 236 IPR003106 GO:0006355|GO:0043565
Trre15g00070 308 MobiDBLite consensus disorder prediction 90 106 - -
Trre15g00070 308 SMART halz 202 245 IPR003106 GO:0006355|GO:0043565
Trre15g00070 308 Gene3D - 138 207 - -
Trre15g00070 308 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Trre15g00070 308 Pfam HD-ZIP protein N terminus 1 110 IPR006712 GO:0005634
Trre15g00070 308 FunFam Homeobox-leucine zipper protein 18 131 207 - -
Trre15g00070 308 Coils Coil 208 238 - -
Trre15g00070 308 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Trre15g00070 308 Pfam Homeodomain 146 200 IPR001356 GO:0003677
Trre15g00070 308 MobiDBLite consensus disorder prediction 107 121 - -
Trre15g00070 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 12 277 - -
Trre15g00070 308 SUPERFAMILY Homeodomain-like 131 203 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00070 Trre-Chr15 548347 551038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00070 1 305 Homeobox Transcription Factor Family AT3G60390 58.410 1.08e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre15g00070 HD-ZIP_N 3.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00070 K09338 - gmx:100798480 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00070 15 548347 551038 Trre15g00070 15 548347 551038 ECH