Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00069 ATGTCACAAGCTCAAAAAGCACTCACTGATTATCTCCATGCCACAAGGTCCATCCCTTATGCCTTTGCAGATAAAATTTCCAAAAACTCTTTTCATTCTCTCTCTAATCTCATTTCAAAGTTGGGTTCTTTTTCACCTTCTGATTTCACCAAGAAGCTTGATAAGTACTTAAGGTACAACCCAATTAATGAATTTGAGTTTTTCTTTGAAAGTATTGGAATTCAATATACTCATGTTTCATCTTTGTTGCCTCATGATAAGTTTTTCTTTTGTGAAGATGGGTCACTTCTAGATTCTGCTTGTGTACTTTGTGAATTTGGGTTTCCTTGGGATAAGATTGGTTTGATTTATATGGAGAGCGGTTTTATGTTTAGGAAAAGTGGTTTTGAGTTAAAGGGTAGGCTTAGTTTGTTGAAAAGATATGGTTTTTGTAATGTGCAAATTGTTGGGATATGTTTGACTTTTCCTTTTGTTTTCGGTGTGGCGGAAGGGAAATTTGTTGATGACATTGATGGGTTGCTTTCTGATTTGAGGGTTGTGTTTTTGGATTTTGATTTGGGAGGGTTTGTTGATGGGAATGTGGATGTTTGGCATGAGGTCTGTAGGAAAATTAAAGTGTTTTATGATTTGAATGATGGTAAGGGGAAGATAGGTGAACTCGTCGGAAGGAATAAACATGTGATTCTTGAATATGGAGAAAAAGAGTTGATTGAAAAGGTTGAGTATTTTTGTAGATTTGGTGTCGAGAAGATGGAAGTTGCTCGGTTGATTCTACAAAGCTCGGAATTGTTGAATCTTGATTTGGAAACGCCGGTGATTAATGTGTTGAAGCTGTTGAAACACATTGGAATGAACTCGAAAGGTCTTGGTGATGTAAGGAAGAACTATGCTCATGTGTTGGGAACAATAAAAATGGCTAATCTTCCCAATGTTATGAGAGCTATGGGTTTACGTGAGTGGTTTTTCGATAAAATAAAGGATGGAAATCATAAGCTTTTAGTGAATTTTGTCACGAGCTATCCCAATGAAGAGCGTGATAAAGGTTATCGAGATGGTTTGAAGGCAATTCATGATACAAGAACACCAACTCATAATATGAATAAATTGAATTTCATGCATAATATTGGCTTTGGTGAAAATGCTATGACCATGGATATCTTAACTCACTTGCATGGAACAAGCGAAGAGTTACAGGAAAGATTTGATTGCCTTCTACATTTAGGGATTGAATTCTCAAAGTTGTGTAAGATAATCACAAAGAAACCGAAGATTCTAAGCCAGAATCCTGAAACCCTAGAGAAAAAGATTAATTTCCTTTGTCAGGAGATGGGAAAATCCTTAGAGCTTTTGGACACTTTTCCAGGATTTATATGCTTTGACTTAGAGAACCGAATTAAGCCGAGGTTCAGATTCTATATGTGGGTTATAGAAAAGGGACTGTCTTCCAAAAAATATTCCATTGCAAGCATGATTGCGACTAGTGAGAAGAATTTTGTTGGCCGTGCTTTTACAATCCACCCGGCCGCTCCAAAACATTGCTCTTGGTTAACGCATACACTTACTGCAGCAGATGTGTTATTGTTGAAAAGAGAAGGGTGGCTTCCCAAGCTTTATGCGCAGTGCAATATTGCGAGTTTTATGGTAGAGGGTGAGGTCTCCCTATTGCTGTGGGTTCTTTAG 1680 0.3744 MSQAQKALTDYLHATRSIPYAFADKISKNSFHSLSNLISKLGSFSPSDFTKKLDKYLRYNPINEFEFFFESIGIQYTHVSSLLPHDKFFFCEDGSLLDSACVLCEFGFPWDKIGLIYMESGFMFRKSGFELKGRLSLLKRYGFCNVQIVGICLTFPFVFGVAEGKFVDDIDGLLSDLRVVFLDFDLGGFVDGNVDVWHEVCRKIKVFYDLNDGKGKIGELVGRNKHVILEYGEKELIEKVEYFCRFGVEKMEVARLILQSSELLNLDLETPVINVLKLLKHIGMNSKGLGDVRKNYAHVLGTIKMANLPNVMRAMGLREWFFDKIKDGNHKLLVNFVTSYPNEERDKGYRDGLKAIHDTRTPTHNMNKLNFMHNIGFGENAMTMDILTHLHGTSEELQERFDCLLHLGIEFSKLCKIITKKPKILSQNPETLEKKINFLCQEMGKSLELLDTFPGFICFDLENRIKPRFRFYMWVIEKGLSSKKYSIASMIATSEKNFVGRAFTIHPAAPKHCSWLTHTLTAADVLLLKREGWLPKLYAQCNIASFMVEGEVSLLLWVL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00069 559 Gene3D Transcription termination factor 3, mitochondrial 38 182 IPR038538 -
Trre15g00069 559 Gene3D Transcription termination factor 3, mitochondrial 359 508 IPR038538 -
Trre15g00069 559 Gene3D Transcription termination factor 3, mitochondrial 193 342 IPR038538 -
Trre15g00069 559 Coils Coil 559 559 - -
Trre15g00069 559 FunFam Transcription termination factor MTEF18, mitochondrial 353 513 - -
Trre15g00069 559 PANTHER CGI-12 PROTEIN-RELATED 7 503 IPR003690 GO:0003690|GO:0006355
Trre15g00069 559 SMART mt_12 254 285 IPR003690 GO:0003690|GO:0006355
Trre15g00069 559 SMART mt_12 219 249 IPR003690 GO:0003690|GO:0006355
Trre15g00069 559 SMART mt_12 447 479 IPR003690 GO:0003690|GO:0006355
Trre15g00069 559 SMART mt_12 415 446 IPR003690 GO:0003690|GO:0006355
Trre15g00069 559 Pfam mTERF 203 303 IPR003690 GO:0003690|GO:0006355
Trre15g00069 559 Pfam mTERF 394 498 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00069 Trre-Chr15 532046 536201 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre15g00069 mTERF 2.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00069 - - gsj:114418754 670.618