Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00058 ATGCATGGGAAAAAAGAACAAGAACATGTAAGAAAAGGTCCATGGAAAACAGAGGAAGATCAAGTGTTACTCCACCATGTCAAAAAATATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGAACTGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAATCTCAAAAATGGGTGCAAGTTTACAACAGAGGAAGAGAGGACAGTGATAGAGTTGCAGGAACAATTTGGAAACAAATGGGCTAAGATTGCATCCCATTTGCCAGGAAGAACAGACAATGATATCAAAAATTTCTGGAGCAGTAGACAAAAGAGATTGGCTAGGCTTCTCAAAACATCATCATCAACAACTTCAAAGTCACACAAAAACAAAACCAAACTTTCTGTCTCTGCTCCAACTTCGGAGATTCCTTTTAAGTTCAGTTCTTCATCAGAGGGAGAAACATCATCAAAGCCTCAATCATGTTCATTACCATGCATTGAAAATCCTGATCAAGTTATCAAAATGGTACCATTACTTGATCTTATAAAATCCGAGCCGCCTAACTTCGACACAAACTACGTCGAACAGGAGTTCACTCCTTTTGATCAGAGCTACAAAAGCACTGAACAACTTACATTTCCTCATATTCCAGAATTCCAAAATGATCTTACTTTTCCAATGCCAAGAGTTGATGAACAAAACTTATTTGATGTTTTTGGTCCCTTGGATTCATCTGAGTTTGGAATGGTTCCTTTTTTTGAACCATTAGGGAGTTGCAGAATTGGGAAAATGGATAGTTTCTTTGATGATTTTCCAGAAGACATGTTTGATAACATTGATCCACCTATAAGTCCATCCAATAAGCTCTGA 876 0.3836 MHGKKEQEHVRKGPWKTEEDQVLLHHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFTTEEERTVIELQEQFGNKWAKIASHLPGRTDNDIKNFWSSRQKRLARLLKTSSSTTSKSHKNKTKLSVSAPTSEIPFKFSSSSEGETSSKPQSCSLPCIENPDQVIKMVPLLDLIKSEPPNFDTNYVEQEFTPFDQSYKSTEQLTFPHIPEFQNDLTFPMPRVDEQNLFDVFGPLDSSEFGMVPFFEPLGSCRIGKMDSFFDDFPEDMFDNIDPPISPSNKL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00058 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Trre15g00058 291 Gene3D - 3 65 - -
Trre15g00058 291 FunFam Transcription factor GAMYB 67 137 - -
Trre15g00058 291 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Trre15g00058 291 SMART sant 11 61 IPR001005 -
Trre15g00058 291 SMART sant 65 113 IPR001005 -
Trre15g00058 291 FunFam MYB transcription factor 12 64 - -
Trre15g00058 291 PANTHER TRANSCRIPTION FACTOR DUO1 4 289 - -
Trre15g00058 291 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Trre15g00058 291 MobiDBLite consensus disorder prediction 118 138 - -
Trre15g00058 291 CDD SANT 68 107 IPR001005 -
Trre15g00058 291 CDD SANT 14 59 IPR001005 -
Trre15g00058 291 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Trre15g00058 291 Pfam Myb-like DNA-binding domain 68 107 IPR001005 -
Trre15g00058 291 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Trre15g00058 291 Gene3D - 67 138 - -
Trre15g00058 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 55 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00058 Trre-Chr15 475449 477370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00058 1 287 MYB Transcription Factor Family AT3G60460 49.836 4.01e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre15g00058 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00058 K09422 - gmx:100818656 390.963