Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00044 ATGTTTGGGCGTGGACCAGCAAGGAAGAGTGACAACACCAAATATTATGATATTCTTGGTGTTTCAAAAAGTGCCAGTGAAGATGAAATTAAAAAAGCCTATAGAAAAGCAGCCATGAAGAACCATCCGGATAAGGGTGGGGATCCTGAGAAATTCAAGGAGTTGGGTCAAGCATATGAAGTCTTAAGTGATCCTGAAAAGAAAGAACTGTATGATCAGTATGGTGAAGATGCCCTTAAAGAAGGAATGGGAGGAGGAGGAGGAAGCTCATTTCATAATCCATTCGATATTTTTGAATCATTTTTTGGTGGAGGAGGTTTTGGTGGAGGAGCTTTTGGTGGTGGTGGTCCTTCACGGGGAAGAAGACAGAAGCAAGGAGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGATGTGTTTAATGGCACTACAAAGAAACTATCTCTTTCTAGAAATGTGCTGTGCGCAAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACAGCTGGAAGGTGTTTTGGATGCCAGGGCACAGGTATGAAGATTACCAGACGACAGATTGGTCTGGGCATGATTCAACAAATGCAACACGTTTGTCCTGAATGCAAAGGAACTGGTGAGGTGATTAGTGAGAGAGATAGATGCCCTCAATGCAAGGGAAACAAGATTAGTCAAGAAAAGAAGGTGCTGGAAGTGCACGTGGAAAAGGGGATGCAGCAGGGTCAAAAGATTGTATTCGAAGGACAAGCTGATGAGGCCCCCGACACAATCACGGGAGACATAGTGTTTGTCTTGCAAGTGAAGGGGCATCCGAAGTTCAAGAGGGAGCATGATGACCTCCATATTGAACACACTCTCAACTTAACTGAGGCTCTCTGTGGATTCCAGTTTAATGTCACACATCTTGATGGAAGGCAACTATTGGTCAAATCAAATCCTGGGGAAGTCGTCAAGCCAGGTCAACATAAAGCAATAAATGATGAGGGAATGCCACAACACAATAGGCCCTTCATGAGGGGACGCCTTTACATTAAGTTTAACGTTGAATTCCCAGAATCGGGATTTCTTTCCCCTAGCCAAAGCCTAGAATTAGAAAAGATATTACCTCAAAAGACAAGCAAGAAATTGTCACAAAAGGAGCTAGATGATTGTGAGGAGGCCACCTTACATGATGTCAATCTTGCAGAGGAGATGAGTCGAAAGAAGCAACAATACCGTGATGCATATGATGACGATGATGATGAAGATGAGCATTCAATGCCTCGGGTACAATGTGCTCAACAGTAA 1287 0.4328 MFGRGPARKSDNTKYYDILGVSKSASEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGGSSFHNPFDIFESFFGGGGFGGGAFGGGGPSRGRRQKQGEDVVHSLKVSLEDVFNGTTKKLSLSRNVLCAKCKGKGSKSGTAGRCFGCQGTGMKITRRQIGLGMIQQMQHVCPECKGTGEVISERDRCPQCKGNKISQEKKVLEVHVEKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKGHPKFKREHDDLHIEHTLNLTEALCGFQFNVTHLDGRQLLVKSNPGEVVKPGQHKAINDEGMPQHNRPFMRGRLYIKFNVEFPESGFLSPSQSLELEKILPQKTSKKLSQKELDDCEEATLHDVNLAEEMSRKKQQYRDAYDDDDDEDEHSMPRVQCAQQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00044 428 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 153 224 IPR036410 -
Trre15g00044 428 Gene3D - 156 222 - -
Trre15g00044 428 SMART dnaj_3 13 67 IPR001623 -
Trre15g00044 428 CDD DnaJ_C 127 353 - -
Trre15g00044 428 Pfam DnaJ central domain 156 222 IPR001305 GO:0031072|GO:0051082
Trre15g00044 428 FunFam DnaJ subfamily A member 2 156 222 - -
Trre15g00044 428 Gene3D - 117 268 - -
Trre15g00044 428 SUPERFAMILY HSP40/DnaJ peptide-binding domain 127 271 IPR008971 GO:0006457|GO:0051082
Trre15g00044 428 FunFam dnaJ protein homolog 11 112 - -
Trre15g00044 428 Pfam DnaJ domain 14 72 IPR001623 -
Trre15g00044 428 SUPERFAMILY Chaperone J-domain 10 116 IPR036869 -
Trre15g00044 428 Hamap Chaperone protein DnaJ [dnaJ]. 11 381 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre15g00044 428 SUPERFAMILY HSP40/DnaJ peptide-binding domain 273 352 IPR008971 GO:0006457|GO:0051082
Trre15g00044 428 Coils Coil 395 415 - -
Trre15g00044 428 CDD DnaJ_zf 156 222 IPR001305 GO:0031072|GO:0051082
Trre15g00044 428 Pfam DnaJ C terminal domain 130 351 IPR002939 -
Trre15g00044 428 FunFam DnaJ subfamily A member 2 270 352 - -
Trre15g00044 428 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 406 IPR044713 GO:0006457|GO:0030544
Trre15g00044 428 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Trre15g00044 428 MobiDBLite consensus disorder prediction 388 428 - -
Trre15g00044 428 PRINTS DnaJ domain signature 16 34 IPR001623 -
Trre15g00044 428 PRINTS DnaJ domain signature 67 86 IPR001623 -
Trre15g00044 428 PRINTS DnaJ domain signature 47 67 IPR001623 -
Trre15g00044 428 ProSiteProfiles Zinc finger CR-type profile. 143 227 IPR001305 GO:0031072|GO:0051082
Trre15g00044 428 MobiDBLite consensus disorder prediction 388 408 - -
Trre15g00044 428 CDD DnaJ 15 64 IPR001623 -
Trre15g00044 428 Gene3D DnaJ domain 11 112 IPR036869 -
Trre15g00044 428 Gene3D - 270 352 - -
Trre15g00044 428 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00044 Trre-Chr15 389504 393899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00044 5 74 C2H2 Transcription Factor Family AT1G74250 40.506 7.74e-11 62.0