Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00043 ATGTTTGGGCGTGGACCAGCAAGGAAGAGTGACAACACCAAATATTATGATATTCTTGGTGTTTCAAAAAGTGCCAGTGAAGATGAAATTAAAAAAGCCTATAGAAAAGCAGCCATGAAGAACCATCCGGATAAGGGTGGGGATCCTGAGAAATTCAAGGAGTTGGGTCAAGCATATGAAGTCTTAAGTGATCCTGAAAAGAAAGAACTGTATGATCAGTATGGTGAAGATGCCCTTAAAGAAGGAATGGGAGGAGGAGGAGGAAGCTCATTTCATAATCCATTCGATATTTTTGAATCATTTTTTGGTGGAGGAGGTTTTGGTGGTGGTCCTTCACGGGGAAGAAGACAGAAGCAAGGAGAAGATGTGGTGCATTCTTTAAAGGTTTCCTTGGAGGATGTGTTTAATGGCACTACAAAGAAACTATCTCTTTCTAGAAATGTGCTGTGCGCAAAATGTAAAGGGAAAGGTTCAAAAAGTGGAACAGCTGGAAGGTGTTTTGGATGCCAGGGCACAGGTATGAAGATTACCAGACGACAGATTGGTCTGGGCATGATTCAACAAATGCAACACGTTTGTCCTGAATGCAAAGGAACTGGTGAGGTGATTAGTGAGAGAGATAGATGCCCTCAATGCAAGGGAAACAAGATTAGTCAAGAAAAGAAGGTGCTGGAAGTGCACGTGGAAAAGGGGATGCAGCAGGGTCAAAAGATTGTATTCGAAGGACAAGCTGATGAGGCCCCCGACACAATCACGGGAGACATAGTGTTTGTCTTGCAAGTGAAGGGGCATCCGAAGTTCAAGAGGGAGCATGATGACCTCCATATTGAACACACTCTCAACTTAACTGAGGCTCTCTGTGGATTCCAGTTTAATGTCACACATCTTGATGGAAGGCAACTATTGGTCAAATCAAATCCTGGGGAAGTCGTCAAGCCAGGTCAACATAAAGCAATAAATGATGAGGGAATGCCACAACACAATAGGCCCTTCATGAGGGGACGCCTTTACATTAAGTTTAACGTTGAATTCCCAGAATCGGGATTTCTTTCCCCTAGCCAAAGCCTAGAATTAGAAAAGATATTACCTCAAAAGACAAGCAAGAAATTGTCACAAAAGGAGCTAGATGATTGTGAGGAGGCCACCTTACATGATGTCAATCTTGCAGAGGAGATGAGTCGAAAGAAGCAACAATACCGTGATGCATATGATGACGATGATGATGAAGATGAGCATTCAATGCCTCGGGTACAATGTGCTCAACAGTAA 1269 0.431 MFGRGPARKSDNTKYYDILGVSKSASEDEIKKAYRKAAMKNHPDKGGDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGGGSSFHNPFDIFESFFGGGGFGGGPSRGRRQKQGEDVVHSLKVSLEDVFNGTTKKLSLSRNVLCAKCKGKGSKSGTAGRCFGCQGTGMKITRRQIGLGMIQQMQHVCPECKGTGEVISERDRCPQCKGNKISQEKKVLEVHVEKGMQQGQKIVFEGQADEAPDTITGDIVFVLQVKGHPKFKREHDDLHIEHTLNLTEALCGFQFNVTHLDGRQLLVKSNPGEVVKPGQHKAINDEGMPQHNRPFMRGRLYIKFNVEFPESGFLSPSQSLELEKILPQKTSKKLSQKELDDCEEATLHDVNLAEEMSRKKQQYRDAYDDDDDEDEHSMPRVQCAQQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00043 422 Gene3D DnaJ domain 11 113 IPR036869 -
Trre15g00043 422 SMART dnaj_3 13 67 IPR001623 -
Trre15g00043 422 Pfam DnaJ domain 14 72 IPR001623 -
Trre15g00043 422 FunFam DnaJ subfamily A member 2 150 216 - -
Trre15g00043 422 Gene3D - 114 262 - -
Trre15g00043 422 SUPERFAMILY HSP40/DnaJ peptide-binding domain 267 346 IPR008971 GO:0006457|GO:0051082
Trre15g00043 422 ProSiteProfiles Zinc finger CR-type profile. 137 221 IPR001305 GO:0031072|GO:0051082
Trre15g00043 422 Coils Coil 389 409 - -
Trre15g00043 422 FunFam DnaJ subfamily A member 2 264 346 - -
Trre15g00043 422 CDD DnaJ_zf 150 216 IPR001305 GO:0031072|GO:0051082
Trre15g00043 422 Gene3D - 150 216 - -
Trre15g00043 422 CDD DnaJ_C 121 347 - -
Trre15g00043 422 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 12 400 IPR044713 GO:0006457|GO:0030544
Trre15g00043 422 MobiDBLite consensus disorder prediction 382 422 - -
Trre15g00043 422 Pfam DnaJ central domain 150 216 IPR001305 GO:0031072|GO:0051082
Trre15g00043 422 MobiDBLite consensus disorder prediction 382 402 - -
Trre15g00043 422 FunFam dnaJ protein homolog 11 112 - -
Trre15g00043 422 Hamap Chaperone protein DnaJ [dnaJ]. 11 375 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre15g00043 422 PRINTS DnaJ domain signature 67 86 IPR001623 -
Trre15g00043 422 PRINTS DnaJ domain signature 47 67 IPR001623 -
Trre15g00043 422 PRINTS DnaJ domain signature 16 34 IPR001623 -
Trre15g00043 422 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 147 218 IPR036410 -
Trre15g00043 422 SUPERFAMILY HSP40/DnaJ peptide-binding domain 121 265 IPR008971 GO:0006457|GO:0051082
Trre15g00043 422 ProSitePatterns Nt-dnaJ domain signature. 52 71 IPR018253 -
Trre15g00043 422 CDD DnaJ 15 64 IPR001623 -
Trre15g00043 422 Pfam DnaJ C terminal domain 124 345 IPR002939 -
Trre15g00043 422 Gene3D - 264 346 - -
Trre15g00043 422 ProSiteProfiles dnaJ domain profile. 14 75 IPR001623 -
Trre15g00043 422 SUPERFAMILY Chaperone J-domain 10 109 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00043 Trre-Chr15 389504 393899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00043 15 74 C2H2 Transcription Factor Family AT1G74250 44.928 8.70e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00043 K09503 - gmx:100800590 678.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00043 15 389504 393899 Trre15g00043 15 389504 393899 ECH