Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00042 ATGTCAAAACATATCAATATAGAAGAAAGTGATGCTTATGAAAACTTTGCTACATCTTCAACAACATCATCAACTTCATCAAATTCAGATACGTGCACCAAACACGACACAAAAAACTCTCCAAAGGACTGCAAGAAGAGGAAGATAAGTAATGAAAATGATGAAAATAATAGCAAACATCCAACTTATAGAGGAGTTAGGATGAGGAATTGGGGAAAATTTGTTTGCGAGATTCGCGAGCCGAAGAAAAAATCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCACATGATGTAGCTGCTTTAGCTATAAAAGGTCATTCAGCATACCTTAATTTTCCTGAATTGGCAAAAGCACTTCCAAAGCCAATAAGTACTTCTCCTAAAGACATTCAAGCTGCAGCTGCAAAAGCAGCTAATAACACTTCATTTGAAGCTCATCAAGATGAACCAACTCAAGAACATCAACAAGCCTCATCTTCAAGTTCAACATTTACTAATGATGATGCTACATTGTTTGATTTGCCAGATCTTTTTCCTGATGATGAAAACAATGGACTTTGTTCATATTCTTCAAAAAATTCTTCTTGGTATTTATGTTCTGTTGATAGTGGATTTAGGCTTGAGGAACCATCTTTTTGGGAGAAATACTAG 669 0.3602 MSKHINIEESDAYENFATSSTTSSTSSNSDTCTKHDTKNSPKDCKKRKISNENDENNSKHPTYRGVRMRNWGKFVCEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAKALPKPISTSPKDIQAAAAKAANNTSFEAHQDEPTQEHQQASSSSSTFTNDDATLFDLPDLFPDDENNGLCSYSSKNSSWYLCSVDSGFRLEEPSFWEKY 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00042 222 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Trre15g00042 222 MobiDBLite consensus disorder prediction 1 64 - -
Trre15g00042 222 MobiDBLite consensus disorder prediction 35 62 - -
Trre15g00042 222 MobiDBLite consensus disorder prediction 141 172 - -
Trre15g00042 222 MobiDBLite consensus disorder prediction 12 34 - -
Trre15g00042 222 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Trre15g00042 222 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Trre15g00042 222 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Trre15g00042 222 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Trre15g00042 222 Pfam AP2 domain 61 112 IPR001471 GO:0003700|GO:0006355
Trre15g00042 222 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Trre15g00042 222 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Trre15g00042 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 34 189 - -
Trre15g00042 222 FunFam Ethylene-responsive transcription factor 2 61 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00042 Trre-Chr15 384188 384856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00042 46 218 AP2-EREBP Transcription Factor Family AT2G44940 51.643 5.88e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre15g00042 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00042 - - gmx:100801129 241.506