Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00031 ATGTTGGACTATGAATGGGGTAACCCATCCAACATCATGCTTACAGGAAATGAAGACAACAACTCCTCCTCCACCGCAGCTTCCGATCAAGCCCACCGCCAAATCTTCGACCACTATGCTTCTCAAGCCATGTTGTCTGAAAATTACCTAAACGGGCCTGGGCCACCCATGAACACAAACACTGGTGATTTTACCCACCATCACCATCAGCAGCAGCAGCAGCAGCAGCATCACTTTAACCCACAAGCCCAACAACAACAACAGCATCATATGCACCACTCTTTCTTTGATCCACGCGCTTTCCATGGCGCGCCTTCAACTGGTTCTTACCCTCCACCACAACCTCAAACTCCTTCCATGCTCTCTCTCGATCCTCTCTCTGGTCATGGACATGGGTCTGGATTCCTTCTCGTGCCCAAGTCTGAGGACCTTAATAGGCCCATGGACTTTGTTGGCTCCAGAATTGGACTCAACCTTGGCGGCCGCACTTATTTTTCGTCTTCTGAAGACGATTTTGTGAGCCGCCTTTATCGTCGGTCTAGACAGGCTGAACAGGGTTCATTGGGTTCGTCGAACTCACCGAGGTGTCAGGCTGAAGGATGCAATGCTGATCTGTCTCAGGCGAAGCACTACCACCGCCGCCATAAGGTTTGTGAGTTTCACTCCAAGGCCGCCACCGTAATCGCTGCTGGGTTGACTCAACGATTCTGCCAGCAATGCAGCAGGTTCCATCTTCTTTCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGTCGCAGGAGAAAAACTCAGCACCCAAATACTCAAGATATTAACAAATCTCACAACACTTCGGAAAATGCTGCCACAAGGTCCCCGCCAGAGTCGGGAACTCAATCTTCATCATCGGTGACGGTAGCTGTTTCTCCGCCGGATTATTTTCGACAAAGGTCATACCAAAGCCAAAGTCCTTCAACAACATCAAGCTCATTGTTTTTCTCCAGCGGGTAG 1011 0.4955 MLDYEWGNPSNIMLTGNEDNNSSSTAASDQAHRQIFDHYASQAMLSENYLNGPGPPMNTNTGDFTHHHHQQQQQQQHHFNPQAQQQQQHHMHHSFFDPRAFHGAPSTGSYPPPQPQTPSMLSLDPLSGHGHGSGFLLVPKSEDLNRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRQAEQGSLGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQHPNTQDINKSHNTSENAATRSPPESGTQSSSSVTVAVSPPDYFRQRSYQSQSPSTTSSSLFFSSG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00031 336 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 142 326 IPR044817 GO:0003677
Trre15g00031 336 MobiDBLite consensus disorder prediction 47 126 - -
Trre15g00031 336 ProSiteProfiles Zinc finger SBP-type profile. 193 270 IPR004333 GO:0003677
Trre15g00031 336 Gene3D - 186 257 IPR036893 GO:0003677|GO:0005634
Trre15g00031 336 FunFam Squamosa promoter-binding-like protein 14 187 257 - -
Trre15g00031 336 MobiDBLite consensus disorder prediction 276 336 - -
Trre15g00031 336 MobiDBLite consensus disorder prediction 47 91 - -
Trre15g00031 336 MobiDBLite consensus disorder prediction 10 30 - -
Trre15g00031 336 SUPERFAMILY beta-sandwich domain of Sec23/24 62 315 - -
Trre15g00031 336 MobiDBLite consensus disorder prediction 260 336 - -
Trre15g00031 336 MobiDBLite consensus disorder prediction 1 30 - -
Trre15g00031 336 Pfam SBP domain 196 269 IPR004333 GO:0003677
Trre15g00031 336 SUPERFAMILY SBT domain 194 273 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00031 Trre-Chr15 301290 303443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00031 1 243 SBP-box Gene Family AT1G02065 46.063 2.32e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre15g00031 SBP 4.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00031 - - lja:Lj3g3v0499510.1 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00031 15 301290 303443 Trre15g00031 15 301290 303443 ECH