Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00017 ATGGAGGAGCTAGTGAGAGGGCGTGAGTATGCCAACAAGCTTGGACAAGTACTAGCAGTCATGAAGATTAATAATAATCATAATGAGTTGGCAGCAGCAACCCCATCATTGTTTGCCCAACATCTTGTCAATAACATTCTCAACTCATTTACCAATACCCTCTTCCTTTTAAAAAAAAATCAGATGCAACTAAAAAGGGACTTTTCCTTCATTATTCCAACTAAATCTGAAGATAACACCCAAGATACTTCCACCGGTGGTGGTGGTGGTGGTAGAGGATCTTACAAACGAAGAAAAACTAGAGAAACATGGGAGAAAATTTCAGAAAGTCCAATAGATGATGGGCATCAGTGGAGAAAGTATGGTCAAAAAACAATCATCAATTCCAAATATTCAAGGGACTACTACAGGTGCACTCACAAGTTAGATCAAAGATGCGAAGCAACGAAACAAGTGCAGAGAGTTGAAGAGAAGCCTGCCTCATATAAAACCACCTATTATGGCCACCACACTTGCAAAAACACAGATCAAGTTATATTTGAACCTACTTCTCCTCCTCCTCCTCCTTCTCACACTAGTTCTTCCTCCATATTGCTTAGCTTTAACAACGCATTCCCAACTCCAAACGAACAAGATTGTCCCTTTTTATCCTCACATAATTCAGTATTGGATTATTGTAAGGAAGAGGAAGTTGTAATTCCCTCACCATCCGAGGATGAAATCTCGTTCTCCCCATTAAATAGTACTAGTAGTACTTTATCATCATCATCATCATCATCATCATCATCAACTTCTAAACTTGAATCCGATGATGATGATGATGATGATCATAAGGATATGATGATGATGATGTATGGTCTCTTGTATGATTCTGTTGATCAGCTTGACCATCATGATCATTTCTTTCACCCTTTTCTTGGCCTTTTATAG 930 0.3871 MEELVRGREYANKLGQVLAVMKINNNHNELAAATPSLFAQHLVNNILNSFTNTLFLLKKNQMQLKRDFSFIIPTKSEDNTQDTSTGGGGGGRGSYKRRKTRETWEKISESPIDDGHQWRKYGQKTIINSKYSRDYYRCTHKLDQRCEATKQVQRVEEKPASYKTTYYGHHTCKNTDQVIFEPTSPPPPPSHTSSSSILLSFNNAFPTPNEQDCPFLSSHNSVLDYCKEEEVVIPSPSEDEISFSPLNSTSSTLSSSSSSSSSSTSKLESDDDDDDDHKDMMMMMYGLLYDSVDQLDHHDHFFHPFLGLL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00017 309 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 195 IPR044810 GO:0003700
Trre15g00017 309 Pfam WRKY DNA -binding domain 113 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g00017 309 MobiDBLite consensus disorder prediction 240 265 - -
Trre15g00017 309 SUPERFAMILY WRKY DNA-binding domain 108 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g00017 309 MobiDBLite consensus disorder prediction 236 275 - -
Trre15g00017 309 SMART WRKY_cls 112 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g00017 309 ProSiteProfiles WRKY domain profile. 107 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g00017 309 Gene3D WRKY domain 99 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g00017 309 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00017 Trre-Chr15 182817 186026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00017 1 172 WRKY Transcription Factor Family AT3G56400 36.066 9.50e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g00017 WRKY 3.4e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00017 - - tpra:123884205 389.808