Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g00016 ATGGATCGTGATAGAGATCATGAGGCAATGGAGGAGCTAGTGAGAGGGCGTGAGTATGCCAACAAGCTTGGACAAGTACTAGCAGTCATGAAGATTAATAATAATCATAATGAGTTGGCAGCAGCAACCCCATCATTGTTTGCCCAACATCTTGTCAATAACATTCTCAACTCATTTACCAATACCCTCTTCCTTTTAAAAAAAAATCAGATGCAACTAAAAAGGGACTTTTCCTTCATTATTCCAACTAAATCTGAAGATAACACCCAAGATACTTCCACCGGTGGTGGTGGTGGTGGTAGAGGATCTTACAAACGAAGAAAAACTAGAGAAACATGGGAGAAAATTTCAGAAAGTCCAATAGATGATGGGCATCAGTGGAGAAAGTATGGTCAAAAAACAATCATCAATTCCAAATATTCAAGGGACTACTACAGGTGCACTCACAAGTTAGATCAAAGATGCGAAGCAACGAAACAAGTGCAGAGAGTTGAAGAGAAGCCTGCCTCATATAAAACCACCTATTATGGCCACCACACTTGCAAAAACACAGATCAAGTTATATTTGAACCTACTTCTCCTCCTCCTCCTCCTTCTCACACTAGTTCTTCCTCCATATTGCTTAGCTTTAACAACGCATTCCCAACTCCAAACGAACAAGATTGTCCCTTTTTATCCTCACATAATTCAGTATTGGATTATTGTAAGGAAGAGGAAGTTGTAATTCCCTCACCATCCGAGGATGAAATCTCGTTCTCCCCATTAAATAGTACTAGTAGTACTTTATCATCATCATCATCATCATCATCATCATCAACTTCTAAACTTGAATCCGATGATGATGATGATGATGATCATAAGGATATGATGATGATGATGTATGGTCTCTTGTATGATTCTGTTGATCAGCTTGACCATCATGATCATTTCTTTCACCCTTTTCTTGGCCTTTTATAG 957 0.3887 MDRDRDHEAMEELVRGREYANKLGQVLAVMKINNNHNELAAATPSLFAQHLVNNILNSFTNTLFLLKKNQMQLKRDFSFIIPTKSEDNTQDTSTGGGGGGRGSYKRRKTRETWEKISESPIDDGHQWRKYGQKTIINSKYSRDYYRCTHKLDQRCEATKQVQRVEEKPASYKTTYYGHHTCKNTDQVIFEPTSPPPPPSHTSSSSILLSFNNAFPTPNEQDCPFLSSHNSVLDYCKEEEVVIPSPSEDEISFSPLNSTSSTLSSSSSSSSSSTSKLESDDDDDDDHKDMMMMMYGLLYDSVDQLDHHDHFFHPFLGLL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g00016 318 MobiDBLite consensus disorder prediction 245 284 - -
Trre15g00016 318 SMART WRKY_cls 121 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g00016 318 MobiDBLite consensus disorder prediction 84 111 - -
Trre15g00016 318 Pfam WRKY DNA -binding domain 122 182 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g00016 318 SUPERFAMILY WRKY DNA-binding domain 117 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g00016 318 ProSiteProfiles WRKY domain profile. 116 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre15g00016 318 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 204 IPR044810 GO:0003700
Trre15g00016 318 Gene3D WRKY domain 108 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre15g00016 318 MobiDBLite consensus disorder prediction 249 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g00016 Trre-Chr15 182790 186026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g00016 2 181 WRKY Transcription Factor Family AT3G56400 34.555 6.16e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre15g00016 WRKY 3.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g00016 - - tpra:123884205 393.275