Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05290 ATGAGTAACGCTGCAACTGATAATAGTAATCTTCTGGGTGATTCCCCAGCCGTTGATATAACCGGCAAGATCATGGTGGTCATCATAATAGTTCTCTTCATGGTTGTTGTTTCTTTTCTTTTCATTCATCTTTTTGCCAAGGGATTCTGGTGGAGCCAGACGCGGCAGCGCCAGAGCGACAACAACAATTCCCAATCCCGCCAAAGAGGACGGACCAGTCATGGTCTTGATGCTTCTGTACTCAAGTCCCTACCCGTATCGGTATTCAATTCCAAAGAAGAAGATGGTTTGGATTTGGAATGTTCGGTTTGCCTCTCAGAAGTAGTTCAAGGTGAAAAGTTGAGGGTTTTGCCTCAATGCAATCACAGGTTTCATATAGACTGCATTGATATGTGGTTCCAATCCCATTCAACCTGCCCCCTTTGCAGAATCGCACTTGCAACTCCTAGTACTACTCCTTCTTCTACCTTAGTAGTACAAGTAGAACAAGAATCACCCGCTCCTGCTTTTCCCACAAATGTCCTGGTTTGGGGAAACCACAACCAAGTAATCTCTTCTACTACTACTTTGGAACAGAACATTTCTTCTTCTTCCTCTTCCAATATTCATAACAACAACACACGCGATGTTGATGGAAATGGAATGTTAAGGATTGATATACCCGGTGATTGTGACTGCGATGCCACTGCTTCATCATCCTCGCCTTTGGGGACTGGAGGAGGAAGATTGAGTTCATTGAAGAGGCTTTTAAGCAGCAGAGCCTTAAGCAGCCTAAATCCATGGAGTCCCACTTCTTCTTCTTCTACTACTACTACACATGTCCAACAACAAACAAAACCAAAAGAAGCACCAGGACAGAGCTAG 864 0.4421 MSNAATDNSNLLGDSPAVDITGKIMVVIIIVLFMVVVSFLFIHLFAKGFWWSQTRQRQSDNNNSQSRQRGRTSHGLDASVLKSLPVSVFNSKEEDGLDLECSVCLSEVVQGEKLRVLPQCNHRFHIDCIDMWFQSHSTCPLCRIALATPSTTPSSTLVVQVEQESPAPAFPTNVLVWGNHNQVISSTTTLEQNISSSSSSNIHNNNTRDVDGNGMLRIDIPGDCDCDATASSSSPLGTGGGRLSSLKRLLSSRALSSLNPWSPTSSSSTTTTHVQQQTKPKEAPGQS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05290 287 MobiDBLite consensus disorder prediction 194 214 - -
Trre14g05290 287 CDD RING-H2_EL5-like 100 143 - -
Trre14g05290 287 SUPERFAMILY RING/U-box 93 150 - -
Trre14g05290 287 MobiDBLite consensus disorder prediction 256 287 - -
Trre14g05290 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 149 IPR013083 -
Trre14g05290 287 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 241 - -
Trre14g05290 287 MobiDBLite consensus disorder prediction 194 211 - -
Trre14g05290 287 Pfam Ring finger domain 100 143 IPR001841 -
Trre14g05290 287 FunFam E3 ubiquitin-protein ligase ATL6 63 149 - -
Trre14g05290 287 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Trre14g05290 287 SMART ring_2 101 142 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05290 Trre-Chr14 58399674 58400537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05290 1 251 C3H Transcription Factor Family AT1G53820 31.908 1.18e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05290 - - mtr:25499753 294.664