Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05285 ATGACCAACAACAATGGATATTCATCATCACAGTTTGGGGACACAACGCTGACCAAAGTGTTCGTTGGAGGACTCGCATGGGAGACTCCCAAAGACACGCTTAGAGAACACTTTCAGAAGTACGGAGACATCCTTGAAGCTGTCGTCATTTCTGATAAGCTTACCGGCAGATCCAAAGGCTATGGCTTTGTTACCTTCAAGGAACCAGAGGCGGCAAACAAGGCTTGCCAGGAACCAACTCTCATCATCAATGGTCGCCGAGCCAACTGCAATATCGCATCTCTCGGTGCTCGCCGCCCAAGGACAAAGTCTTCTCCCACGAGTACTCCACCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCTAGGAACCAAGTACCCAAGCAGCCAAGTGCAGTGGTATTATCCAATGGCCACACCCACAATGCCTACCCCATTCCATCATCAACACGCTCACGCCTTTCCTTTCTACGGGTACACGCCCACCTACATTGCAACAGATCATCATATGAATTACAATTACAACTACGGTTACAATTACAATCAGAAGCTGAACTATGGAAGCGGTGGGAGCTACGTGTATCCAAGGGTGGGTGCGATGCCAGTAATGTACCACCCTATCTACAGAACCGAGGCTATGGCTTCGCCGCTGATGGGTGTCCCTGCACCTCAAATCTTCAACCATTATGCTCCATCCATCACTCCTACTCCTACTCCTACTCCTACTACATGTCCAGTTGGCACCGGTGAATGCTTCAAAAGGGCAGTGGTTTGA 774 0.5 MTNNNGYSSSQFGDTTLTKVFVGGLAWETPKDTLREHFQKYGDILEAVVISDKLTGRSKGYGFVTFKEPEAANKACQEPTLIINGRRANCNIASLGARRPRTKSSPTSTPPSSPPPPPPPPLGTKYPSSQVQWYYPMATPTMPTPFHHQHAHAFPFYGYTPTYIATDHHMNYNYNYGYNYNQKLNYGSGGSYVYPRVGAMPVMYHPIYRTEAMASPLMGVPAPQIFNHYAPSITPTPTPTPTTCPVGTGECFKRAVV 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05285 257 MobiDBLite consensus disorder prediction 107 123 - -
Trre14g05285 257 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 107 IPR000504 GO:0003723
Trre14g05285 257 MobiDBLite consensus disorder prediction 94 123 - -
Trre14g05285 257 SUPERFAMILY RNA-binding domain, RBD 17 105 IPR035979 GO:0003676
Trre14g05285 257 PANTHER BOULE-RELATED 9 231 - -
Trre14g05285 257 Gene3D - 2 108 IPR012677 -
Trre14g05285 257 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Trre14g05285 257 SMART rrm1_1 19 91 IPR000504 GO:0003723
Trre14g05285 257 FunFam Putative RNA-binding protein ARP1 12 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05285 Trre-Chr14 58368440 58370487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05285 14 200 C2H2 Transcription Factor Family AT2G19380 30.846 2.33e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05285 - - mtr:25499746 299.286