Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05282 ATGGAAGAAATGAAAGGGTATTGTTCTGATAGCAAGGAAGAAGAAGAGGAAGAAGGTGCAGATGAAAATATCATCCCAATCACAAGAGAAGGAGGTGAAAACAGCAGCAGGTTGCAGCTGGAAGAAGAAGATGCGAGGATGAATGAGGAAAGAAAGCAGGTAGAGGAAGTAGATTTGATGGAGTTGAGATTGGGAGGAGGAAGAGGGAGCAAGAGCAAGAGCAAGGAGGAAGATGGAATAGGAGGGAGTTCAAATTCAAAGGAGGAGGAGGTATTGCCGGTGGTAGTGGAAAAAGAGCACATGTTTGACAAAGTAGTGACACCTAGTGACGTAGGGAAGCTGAACCGACTTGTGATTCCAAAGCAGTACGCAGAGAAGTACTTCCCATTGGATTCATCTAACCAGAAAGGGCTTCTTCTCACTTTTGAAGATAGGGATGGCAAAATATGGCGGTTCAGATATTCATATTGGAACAGTAGCCAGAGCTATGTGATGACAAAAGGATGGAGTCGTTTCGTTAAGGAGAAGAAGCTTGATGCTGGTGACATTGTTTCATTTCACCGTGGCCGTCATCAATTGTACAGACACAAGTTGTACATTGATTGGAGGCCAAGGTCTCACTCTCAGCATCCTCACCACCTCATCCAACCTCACATGATCATCACCGGACTGCCTAATTTCTATCTTCCCAATCATCATCACTCCTCACCATCGTCACTATACACCTCCTCACAATACTCCCAGCTACCTAATTACCCCACCAATGCTGCAATACATCCTCCTCCTTATCCTCATCAATATTACAACAACAATTTCTATACTACCAGTACTGCACTTCATCAACACCACCACCACCATCCTCCTGCTGAGCACCTTAATAATATGAATCCCCTCTATTATCTCCCCTCCTCGCCAATCACGCCTACAGCAACAAGTGGTGGCGGCGGCGGCGGCGTTCATCAACACTTGCAGGGGCAAGGGCAACAACAAGATCAGAGAAATGTGAATGTTCCCATGAATATGATAATTGATTCTGTGCCGGTTGCACATCACCACCGTGGCGGCAATGATACCAATAGTAGCGGAAAACGGAGCCTGAGGCTATTTGGAGTGAACATGGAATGTGAATCTACTTCTGCAAATTCAGCAGCAGCAACAACGTCAGGGCTCTTTGATTCCCAATATCGGCGCCAGCAGTGA 1200 0.4608 MEEMKGYCSDSKEEEEEEGADENIIPITREGGENSSRLQLEEEDARMNEERKQVEEVDLMELRLGGGRGSKSKSKEEDGIGGSSNSKEEEVLPVVVEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDSSNQKGLLLTFEDRDGKIWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGRHQLYRHKLYIDWRPRSHSQHPHHLIQPHMIITGLPNFYLPNHHHSSPSSLYTSSQYSQLPNYPTNAAIHPPPYPHQYYNNNFYTTSTALHQHHHHHPPAEHLNNMNPLYYLPSSPITPTATSGGGGGGVHQHLQGQGQQQDQRNVNVPMNMIIDSVPVAHHHRGGNDTNSSGKRSLRLFGVNMECESTSANSAAATTSGLFDSQYRRQQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05282 399 CDD B3_DNA 100 188 IPR003340 GO:0003677
Trre14g05282 399 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 384 IPR044800 GO:0003700
Trre14g05282 399 Gene3D - 95 215 IPR015300 -
Trre14g05282 399 SUPERFAMILY DNA-binding pseudobarrel domain 99 194 IPR015300 -
Trre14g05282 399 FunFam B3 domain-containing protein 95 215 - -
Trre14g05282 399 Pfam B3 DNA binding domain 102 203 IPR003340 GO:0003677
Trre14g05282 399 MobiDBLite consensus disorder prediction 35 84 - -
Trre14g05282 399 Coils Coil 37 60 - -
Trre14g05282 399 ProSiteProfiles B3 DNA-binding domain profile. 102 206 IPR003340 GO:0003677
Trre14g05282 399 SMART B3_2 102 206 IPR003340 GO:0003677
Trre14g05282 399 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05282 Trre-Chr14 58340706 58342360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05282 88 375 RAV Transcription Factor Family AT2G46870 45.485 4.04e-63 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre14g05282 B3 1.7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05282 K09287 - tpra:123889518 449.514