Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05280 ATGGAAGAAGATGATGCAGCGGCGAATGCAAATAGGGTTTCATCTCCCTCTTACTGGTTGGATGCCTGCGAGGATATCTCTTGCGATTTCATTGATTTTGATTCTTCTTCTTCTACTACTTTAGACAACAACAACAACTCCACCACCACTACTACTGCTACTGCTGTTGATGATGTGCTTCTTCCTACTCCCACCAGTAATCAAGACTTTTTTGGTGGTATTGATCGAATCTTTGACAGCATCAAGAACGGTGATGGTCTCCCTCAACCTAATGCTGTTGCTGCTCTTGCTGTCGAAGAAGAACAACAACAAGATAATAGATGCAACAAAAGGGCTCGCCTTGCCGGATGCTACAACAACAACAACAATCACGACCGGAGAATCAATCATCAACCCACCAATGACAGGTTTGAGAGGTCTTTCAATAATAATAATAACAATAGGAAAAGACCAAGGGATGGTGGTGTGACTGATACTAGGAAGAAGAAGAGGCCAGCAGGAGGGAATTATCATCATCATCATCATCATCACCAAGATTTCAATAAAAAGGGTTATTGGGTGAGGGATAAGTCTGGTTCCAATGACTTAGTCTTCCGTTCAGGTAATTGGGAACCCAATTCAACCCACCAAGACAACAACAACAACAACAACAACATCAAACAGGAGGAGGAGAAGGAGGAAACCCACCATACCGACCTACCTGCTAAGGAGAAGCTTCCTGAGGAAAAAGCTAGACAGTATCAGTTGGATGTTCTTGAACAGGCAAAGAACAGAAATACCATTGCTTTTCTTGAAACTGGAGCCGGCAAAACCCTCATTGCTGTTCTTCTCATTAAATCTATACACCACACTTTACATCACCAAAATAAGAAAATGCTTGCAGTCTTTTTGGTTCCTAAAGTTCCACTTGTTTATCAGCAAGCTGAGGTAATCCGTGAGCGCACTGGATATCAAGTGGGCCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTCGACACCAAACATGTTTTAGTCATGACTGCTCAAATACTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCCTTATTCTGGACGAGTGCCATCATGCTGTGAAGAAACACCCATATTCGCTGGTGATGTCCGAGTTCTACCATACAACGCCGAAAGAAAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTAAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGTACCATTAAAGATCGTAAAGAGCTGGAGAAACATGTTCCTATGCCCTCTGAAATTGTGGTGGAGTATGATAAAGCTGCCAGTCTGTGTTATTTACATGAGCAAATAAAGCAGATGGAGGCTGAAGTTGAGGAAGCTGCAAAATCTAGTTCAAGAAAAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTATTAATTATGCACTCGGTGAACTGGGACAGTGGTGTGCATATAAGGTTGCACTATCTTTTCTTGCAGCTCTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCGTATCTGAGCAAAGTTGTATCTCTTCTGAAATGTCAACTGTCTGAGGGTGCCGTTTCGGACAAAAATGGAGTAGATGGCCCAGAGAATGGTGCAGCTCACAGCGGGTCTGATGAACATGAAGAGATGGAAGAAGGAGAGCTTCCGGACAGTCACGTTGTCTCTGGTGGGGAGCATGTGGATGTCATAATAGGTGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCTTTAATCAAAATACTCCTCAAGTATCAGAACACAGACGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCCGCGTTAGTTCTACCCAAGGTTTTTACCGAGCTTCCTTCTCTTAGTTTTGTGAAGTGTGCAAGCTTAATTGGTCATAACAATAGCCAGGAAATGCGGAGCCACCAAATGCATGATACAATTGCTAAGTTCCGTGATGGGCGGGTCACATTATTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGATCTCGCGAAGACCGTTCTGGCATACATTCAGTCTAGGGGGCGTGCTAGAAAGCCTGGGTCTGATTACATCCTAATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAAACTTTGCGAAGAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAAGACACTTCAAGGTTGATTTCTGTAGATACCCATCCAGAAACAATTTACCAGGTGAAATCTACTGGTGCAGTAGTTAGCTTAAATTCTGCTGTAGGTCTTGTCCACTTTTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGCCCTGAGTTCATTATGGAGCAGCATGAAAACCCCGGAGGTCCCACTGAATATTCTTGCAGGCTTCAACTGCCGTGTAATGCACCATTTGAAAATCTGGAGGGCCCTATCTGCAGTTCAATGCGCTTGGCACAACAGGCTGTTTGTCTAGCTGCTTGCAAAAAATTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGAGGAGAAAAAGAAAAGGCTGAGCAAACTGATGAAGGGGATGCACTTCCTGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACGACTCCAAAATGCTTCATCTTTATATGTATACCATAAAGTGCGAGAATGTAGGCCATTCAAAAGATCCATTCTTGACCCAGGCTTCAAATTTTGCAGTACTTTTTGGCACTGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACTGTGACTACCAAGGCATCTCTTGTCTTTAGAGATTCAATAGATATCACAGAGAGTCAGTTAGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTTTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCCGATGCATGGAAAAATCCCCTCCAGAAGGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACTTTAGGTGGCGATAGAAGGGAATACGGATTTGGGAAACTGCGTCATGGCTTGGCTTTTGGGCAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTAGTGAAAGCTTCAGGATTGGTTCCTAACAGAGATTCCATGCAAACTCAAAAGCATATCAACATGACTAGCAAAGGAAAATTGATAATGGCAGATACCTGTACCAGTGCAGATGATCTGGTCGGAAGAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTAGATTCGATACGCTATGAAATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAATACAGTTCCTATGCTGATTACTACAAGCAAAAATATGGTGTTGATTTGGTTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCATACTGCAAGAATCTTTTGTCACCTCGATTTGAACACAGTGAAGCACATGAAGGTGAATCTGAAGAGACTCAGGACAAAACTTACTATGTTTTCCTTCCTCCTGAGCTGTGTCTAGTACACCCACTGCCTGGATCACTCGTTCGTGGTGCTCAAAGGCTGCCTTCAATAATGAGGAGGGTTGAAAGCATGTTGCTTGCAGTTCAGCTTAAGAATATGATAAATTATCCTGTTAAGGCTTCCAAGATCTTGGAGGCCTTGACCGCTGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCGGAGCTTCTTGGAGATGCTTACCTTAAATGGGTTGTTAGTCGTTTTCTTTTCCTAAAATATCCACAGAAACATGAAGGCCAGCTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTGTACCAGTATGCATTAAGTAAAGGTCTTCAATCATATATCCTAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACGAAGGATGGGGAGTCATCTTTATTTGACGGAGAGCAGTCGATTTGTAAGATTGAGAGGATAGACAACACTGACGGATTTGATGATGAAATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACCGAGTTCTGTCCAGCAAGACACTTGCAGATGTTGTGGAAGCATTGATTGGGGTATATTATGTCGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGTATTCACATTGAGATTGATCCCGATGAGATGGAGTGTACAACAAAGCCATCCATTGTTCCGGACAGCATACTTAAGAGTGTTGATTTTGATGCTTTAGAAGGTGCTCTAAATATTAAGTTTAAAGACAAGGGGCTGCTGATAGAATCCATAACTCATGCCTCCAGACCATCTTCAGGAGTATCCTGTTATCAGCGGCTTGAGTTTGTTGGTGATGCTGTCTTGGACCATCTTATAACCAAGCACTTATTTTTCTCGTACACAGATCTGCCACCAGGACGTCTGACTGACCTTCGAGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTACAGTTAAACACAATCTTCACCTGCATCTGCGACATGGATCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAACCAGGGTTTAACTCGTTTGGTCTTGGAGACTGCAAAGCTCCCAAGGTCCTTGGAGACATCCTTGAATCTATTGCTGGTGCCATTTTTCTCGACAGTGGGAGAAATACTGCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCCATGGTTACACCAGAGACTTTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGTCAACAGCAGGCCGAAGGTTTGGAGTATAGAGCAAGTCGTGCTGGCAATTTAGCCACTGTTGAAGTATTCATTGATGGGATACAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAACGCTCTTGCTGCTTTGAAAGAGAAGGACATGGAAAAAATTCAGGAAAAAAACGATGAAAATGGGACAAAGAATGGCAACCAGACATTTACTAGACAAACATTAAATGATATCTGTTTGCGAAGAAGCTGGCCTATGCCAATATACCGGTGTGTGAGTGAGGGTGGTCCTGCACATGCAAAGAGGTTTACATTTGCAGTGCGCGTCAATACTACCGATAGAGGTTGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAGCTAATAAACAAATTATACTCATGA 5709 0.4334 MEEDDAAANANRVSSPSYWLDACEDISCDFIDFDSSSSTTLDNNNNSTTTTTATAVDDVLLPTPTSNQDFFGGIDRIFDSIKNGDGLPQPNAVAALAVEEEQQQDNRCNKRARLAGCYNNNNNHDRRINHQPTNDRFERSFNNNNNNRKRPRDGGVTDTRKKKRPAGGNYHHHHHHHQDFNKKGYWVRDKSGSNDLVFRSGNWEPNSTHQDNNNNNNNIKQEEEKEETHHTDLPAKEKLPEEKARQYQLDVLEQAKNRNTIAFLETGAGKTLIAVLLIKSIHHTLHHQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEIVVEYDKAASLCYLHEQIKQMEAEVEEAAKSSSRKSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVALSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNGVDGPENGAAHSGSDEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQNTDDFRAIIFVERVVSALVLPKVFTELPSLSFVKCASLIGHNNSQEMRSHQMHDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRREAIERTDLSHLKDTSRLISVDTHPETIYQVKSTGAVVSLNSAVGLVHFYCSQLPSDRYSILRPEFIMEQHENPGGPTEYSCRLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEKEKAEQTDEGDALPGTARHREFYPEGVADILKGEWILSGKDACNDSKMLHLYMYTIKCENVGHSKDPFLTQASNFAVLFGTELDAEVLSMSMDLFIARTVTTKASLVFRDSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSLDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGLAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDSMQTQKHINMTSKGKLIMADTCTSADDLVGRIVTAAHSGKRFYVDSIRYEMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLVYKQQPLIRGRGVSYCKNLLSPRFEHSEAHEGESEETQDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVKASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDGESSLFDGEQSICKIERIDNTDGFDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIHIEIDPDEMECTTKPSIVPDSILKSVDFDALEGALNIKFKDKGLLIESITHASRPSSGVSCYQRLEFVGDAVLDHLITKHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRASRAGNLATVEVFIDGIQVGAAQNPQKKMAQKLAARNALAALKEKDMEKIQEKNDENGTKNGNQTFTRQTLNDICLRRSWPMPIYRCVSEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELINKLYS 1902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05280 1902 Gene3D - 1737 1815 - -
Trre14g05280 1902 SMART DRBM_3 1740 1801 IPR014720 -
Trre14g05280 1902 SMART DRBM_3 1825 1898 IPR014720 -
Trre14g05280 1902 Pfam Ribonuclease III domain 1379 1524 IPR000999 GO:0004525|GO:0006396
Trre14g05280 1902 Pfam Ribonuclease III domain 1600 1713 IPR000999 GO:0004525|GO:0006396
Trre14g05280 1902 CDD DSRM_DCL_plant 1830 1899 - -
Trre14g05280 1902 CDD RIBOc 1361 1540 IPR000999 GO:0004525|GO:0006396
Trre14g05280 1902 SUPERFAMILY dsRNA-binding domain-like 1828 1897 - -
Trre14g05280 1902 MobiDBLite consensus disorder prediction 591 622 - -
Trre14g05280 1902 SUPERFAMILY RNase III domain-like 1338 1542 IPR036389 GO:0004525|GO:0006396
Trre14g05280 1902 MobiDBLite consensus disorder prediction 165 181 - -
Trre14g05280 1902 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 291 778 IPR027417 -
Trre14g05280 1902 FunFam Endoribonuclease dicer-like 1 834 935 - -
Trre14g05280 1902 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 650 811 IPR001650 -
Trre14g05280 1902 MobiDBLite consensus disorder prediction 928 949 - -
Trre14g05280 1902 CDD RIBOc 1581 1736 IPR000999 GO:0004525|GO:0006396
Trre14g05280 1902 MobiDBLite consensus disorder prediction 604 622 - -
Trre14g05280 1902 ProSiteProfiles Ribonuclease III family domain profile. 1565 1713 IPR000999 GO:0004525|GO:0006396
Trre14g05280 1902 SUPERFAMILY RNase III domain-like 1564 1734 IPR036389 GO:0004525|GO:0006396
Trre14g05280 1902 FunFam endoribonuclease Dicer homolog 1 1830 1899 - -
Trre14g05280 1902 MobiDBLite consensus disorder prediction 142 164 - -
Trre14g05280 1902 SMART PAZ_2_a_3 1186 1346 IPR003100 GO:0005515
Trre14g05280 1902 CDD DEXHc_dicer 243 442 - -
Trre14g05280 1902 Gene3D - 238 482 IPR027417 -
Trre14g05280 1902 Gene3D - 637 803 IPR027417 -
Trre14g05280 1902 ProSiteProfiles Ribonuclease III family domain profile. 1365 1524 IPR000999 GO:0004525|GO:0006396
Trre14g05280 1902 Pfam PAZ domain 1207 1342 IPR003100 GO:0005515
Trre14g05280 1902 Gene3D Dicer dimerisation domain 834 936 IPR038248 -
Trre14g05280 1902 Gene3D - 1830 1899 - -
Trre14g05280 1902 ProSiteProfiles PAZ domain profile. 1182 1322 IPR003100 GO:0005515
Trre14g05280 1902 MobiDBLite consensus disorder prediction 117 242 - -
Trre14g05280 1902 FunFam Endoribonuclease dicer-like 1 638 800 - -
Trre14g05280 1902 Pfam Type III restriction enzyme, res subunit 252 410 IPR006935 GO:0003677|GO:0005524|GO:0016787
Trre14g05280 1902 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 839 934 IPR005034 GO:0016891
Trre14g05280 1902 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1824 1899 IPR014720 -
Trre14g05280 1902 Gene3D paz domain 1201 1320 - -
Trre14g05280 1902 FunFam Endoribonuclease dicer-like 1 1559 1734 - -
Trre14g05280 1902 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 251 428 IPR014001 -
Trre14g05280 1902 Pfam Helicase conserved C-terminal domain 647 764 IPR001650 -
Trre14g05280 1902 FunFam Endoribonuclease Dicer 1 1202 1320 - -
Trre14g05280 1902 FunFam Endoribonuclease dicer-like protein 239 479 - -
Trre14g05280 1902 CDD SF2_C_dicer 644 774 - -
Trre14g05280 1902 PANTHER DICER-RELATED 1185 1804 - -
Trre14g05280 1902 SMART ultradead3 240 443 IPR014001 -
Trre14g05280 1902 Pfam Dicer dimerisation domain 839 927 - -
Trre14g05280 1902 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1824 1895 - -
Trre14g05280 1902 Gene3D Ribonuclease III domain 1343 1539 IPR036389 GO:0004525|GO:0006396
Trre14g05280 1902 Gene3D Ribonuclease III domain 1560 1734 IPR036389 GO:0004525|GO:0006396
Trre14g05280 1902 MobiDBLite consensus disorder prediction 195 217 - -
Trre14g05280 1902 MobiDBLite consensus disorder prediction 218 242 - -
Trre14g05280 1902 SMART riboneu5 1361 1543 IPR000999 GO:0004525|GO:0006396
Trre14g05280 1902 SMART riboneu5 1580 1736 IPR000999 GO:0004525|GO:0006396
Trre14g05280 1902 MobiDBLite consensus disorder prediction 925 949 - -
Trre14g05280 1902 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1739 1802 IPR014720 -
Trre14g05280 1902 SMART helicmild6 677 766 IPR001650 -
Trre14g05280 1902 ProSitePatterns Ribonuclease III family signature. 1600 1608 IPR000999 GO:0004525|GO:0006396
Trre14g05280 1902 SUPERFAMILY dsRNA-binding domain-like 1695 1823 - -
Trre14g05280 1902 FunFam Endoribonuclease dicer-like protein 1344 1536 - -
Trre14g05280 1902 SUPERFAMILY PAZ domain 1203 1322 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05280 Trre-Chr14 58305570 58315132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05280 663 806 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 8.68e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05280 K11592 - gmx:100811631 3172.49