LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre14g05278	ATGGACGCTTACTCATCCGGAGAAGAAGTGGTTGTCAAGACAAGAAAACCGTATACCATCACAAAACAAAGAGAACGATGGACAGAAGAGGAACATGATAGATTTTTAGAAGCTCTCAAGCTATATGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAAACTGCTGTGCAAATCAGGAGCCATGCCCAAAAATTCTTTTCAAAGTTGGAGAAGGAAGCACTTGTAAAAGGTGCTGCATTAGGACAAGCTCTTGACATAGACATCCCCCCTCCACGGCCCAAAAGGAAACCAAGCAATCCTTATCCTCGCAAGACCAATGTTGGTACCCCAACATTACATAGTGGAGCAAAGTATGGAAAGCCACTTATTGCAGTTGCATCTTCGCATGGTAAACAGGCAATGGATTTTGAGAAAGAATCACCTCCAGAGAAGCATAAAGATGAGGAAAGGTCAACAACTGGAAAAGAAAATAACAATGACAATTCTTCAAAAGTATTTACAATCCTCAAGGAGGCACCCTGTTCGTCTGTATCTTCAGCAATCCAGAGTTCAATCTCAAATTTAGTGCCACAGACAAACTCCTGCACCTTGAGGGAGTTTACACCTTCAGTGAAAGAGGTAATAACTCGAGATGAAACAAATGAATCTTTTCCTGCTTCTGAGATTGAAAATCAGATGTTGGAGATAGATGATGGCAAACACACACATAAGACTAATGGCACTTGTAAAACCTCTAAGTTGGATAATTCTTGTTCTCCTAAATCGGTTCAAGTTGAGAAAACAGATGGTCTTACTTCGGCATTAACAATAGATGAGATGCAAAATAATCAGAATTACCCAAGACATGTCACTGTGCACGTTGTTGATGGGAACCTTGGAACTAGCACTCAAACTCCATCACAGGATATGTTGATTCAAGACTCCACATTTCAGCCAATAGGAGGGATTAATGGGCAACGTAATCTTTTCACAAATTCAGCTGCATCAAACACAAGTGAAAGTCAAAATAACATGACACGATCCTCTATTCATCAATCATTTCCTCCGTGTCCTCCCTTTGTACAACATAATCATGATGATTATCAATCCTTTCTCAACATGTCTTCTACATTTTCAAGTCTTCTTGTTTCTACCTTGCTGCAACACCCTGCAGCGCATGCTGCGGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGTAGAAAGTTCAGCTGATTCTCCTGCTTTCTCTCAAGGAGCTTTTCCATCTAGACAAATTGGTTCCCCTCCTGGTGTGGCAGCTATTGCAGCTGCTACGGTAGCTGCTGCAACTGCATGGTGGGCAGCTCATGGACTGCTTCCTTTGTGCGCTCCACTCCATACAGCTTTTGCCTGTCCTCCTGCAACAGCAACTGTAGTTCCATCAACGAATCCTAGTGAAGCACCACCAAAGACAAAACAAGGAGATATTACACTACAAAATCCTCCTCTGCAAGATCAGATATTGGATCCAGAAGACTCGGAAGCTTTGCTAGCTCAGCATTCAGCTTCCAAGTCACCAGGTGTTTCTTTATCTGAATCTGAGGAGAGTGGAGATGCCAAGTTAAATACTTCAGCAAAGGTCACTATTAATCTTGACATAAACCAACCAATTTCTGAGAACCCTGATCCCAACAAAATGGAGGGCAGAAAACTGGTAGACAGGTCTTCTTGTGGTTCCAACACAACCTCTAGCTGTGAAGAGACTGATGCGCTAGAGAAGGATGGTAAAGAAAAGGAAGATTCCAAAGCACCTGAGGCAGACCATTTAGCCACTGATCCTAGTAGTCGTCGATATAGAAGCATTAGCAACCTTATTGATTCTTGGAAGGAGGTGTCTGAAGAGGGACGACTTGCCTTCCGGGCTCTATTCTCCAGAGAGGTGTTGCCCCAAAGCTTTTCACCTCCTCATGATTTGATAGATAAGGATCAACAGATGGACAACATGAAGCATAACGAGCAAAATGTAGACGACAGAGATCAACTTGACAGCAAGAAATGCAGTTCTAATTGCGACCGGGTGCAGCAAAACCTACCATTTGTACAAAATAACAATGAGGAGGATGGACTGCTAACCTTAGGTCTTGGACAAGGTAAGCTTAAGACTCGTCGAACAGGGTTTAAACCATACAAAAGATGTTTAGTAGAGGCCAAGGAAAACAGGGTAGGAACGGCTTGCAATCAAGTTGAAGAGACGGGTCCCAAGAGGATACGCTTGGAAGGGGGGACTTCTACTTGA	2268	0.4312	MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHDRFLEALKLYGRAWQRIEEHIGTKTAVQIRSHAQKFFSKLEKEALVKGAALGQALDIDIPPPRPKRKPSNPYPRKTNVGTPTLHSGAKYGKPLIAVASSHGKQAMDFEKESPPEKHKDEERSTTGKENNNDNSSKVFTILKEAPCSSVSSAIQSSISNLVPQTNSCTLREFTPSVKEVITRDETNESFPASEIENQMLEIDDGKHTHKTNGTCKTSKLDNSCSPKSVQVEKTDGLTSALTIDEMQNNQNYPRHVTVHVVDGNLGTSTQTPSQDMLIQDSTFQPIGGINGQRNLFTNSAASNTSESQNNMTRSSIHQSFPPCPPFVQHNHDDYQSFLNMSSTFSSLLVSTLLQHPAAHAAASFAATFWPYANVESSADSPAFSQGAFPSRQIGSPPGVAAIAAATVAAATAWWAAHGLLPLCAPLHTAFACPPATATVVPSTNPSEAPPKTKQGDITLQNPPLQDQILDPEDSEALLAQHSASKSPGVSLSESEESGDAKLNTSAKVTINLDINQPISENPDPNKMEGRKLVDRSSCGSNTTSSCEETDALEKDGKEKEDSKAPEADHLATDPSSRRYRSISNLIDSWKEVSEEGRLAFRALFSREVLPQSFSPPHDLIDKDQQMDNMKHNEQNVDDRDQLDSKKCSSNCDRVQQNLPFVQNNNEEDGLLTLGLGQGKLKTRRTGFKPYKRCLVEAKENRVGTACNQVEETGPKRIRLEGGTST	755

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre14g05278	755	PANTHER	SWI/SNF COMPLEX-RELATED	7	686	-	-
	Trre14g05278	755	MobiDBLite	consensus disorder prediction	87	119	-	-
	Trre14g05278	755	MobiDBLite	consensus disorder prediction	468	497	-	-
	Trre14g05278	755	SUPERFAMILY	Homeodomain-like	18	74	IPR009057	-
	Trre14g05278	755	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	73	IPR017930	-
	Trre14g05278	755	ProSiteProfiles	Myb-like domain profile.	19	69	IPR001005	-
	Trre14g05278	755	MobiDBLite	consensus disorder prediction	135	158	-	-
	Trre14g05278	755	ProSiteProfiles	SANT domain profile.	22	73	IPR017884	-
	Trre14g05278	755	SMART	sant	23	71	IPR001005	-
	Trre14g05278	755	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	22	71	IPR006447	GO:0003677
	Trre14g05278	755	FunFam	protein REVEILLE 6 isoform X1	26	74	-	-
	Trre14g05278	755	Gene3D	-	26	73	-	-
	Trre14g05278	755	MobiDBLite	consensus disorder prediction	510	531	-	-
	Trre14g05278	755	CDD	SANT	26	69	IPR001005	-
	Trre14g05278	755	MobiDBLite	consensus disorder prediction	543	605	-	-
	Trre14g05278	755	MobiDBLite	consensus disorder prediction	131	167	-	-
	Trre14g05278	755	Pfam	Myb-like DNA-binding domain	24	67	IPR001005	-
	Trre14g05278	755	MobiDBLite	consensus disorder prediction	578	605	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre14g05278	Trre-Chr14	58292061	58300865	Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Trre14g05278		Myb_DNA-binding	2.4e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre14g05278	K12133		-	gmx:778086	1012.68