Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05272 ATGGGTGAAGCAACGATGCAGATCAACAATCATCATCATGACTCAGTCGACAAGTTTCTTCCTCCCACGATGCTTAGAGTCTTGCTCGTCGAAGCTGATGATTCTACCCGCCACATTATTTCTGCACTTCTTCGCAAATGCGGTTACAAAGTTGCTGCAGTTCGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAATCATCTGGAATAGATCTCGTATTAACAGAAGTGGAGTTGCCATCAATATCTGGTTTTTCACTACTTACTTCAATCATGGAGCTTGACAATTGCAAAAACATTCCTGTCATAATGATGTCTTCTAACGATTCAGTTAGCACGGTGTTCAAATGCATGCTAAATGGGGCCGTCGATTTTCTCATTAAACCTGTTCGGAGGAATGAGCTTAGGAACTTGTGGCAACATGTGTGGAGAAGGCATACCATTAGCATGCCTCCTCAAAATATAACATTTCCACAGAATAAACTTGATGTTGCTGCAGAAAACAATGCTGCAAGCAATAATTCTAGTGGTTCTGTGGCTTCCACGCAAAAAAATGTTGAATGCAGCGAAAAAACTAGTGAGGCTCAAGATATGTCCCAGCTGAAGAGTTCTTCATGTTTGAGCAATACCAGCCAGGCAAAGCACGAAAATTCTACCAGATATGAAAGGGAGTCTACTGAGTATAACGGTGAAACTGGAGAGAAATCAACTATAATAGCATCTAAAGCTGCAGGGTATGACAAAATTTCAACAGGTTTAAGGCTTGGTCAAAGCTATGATTGTATAGAAACAGAAAACCAAGATGAAGTGTTAAAAACAGAGTTTAGCAAAGCTAATCCTCATACTAATTCAAAGATTCGTCAATGGAATGATGAAATAGAAGAACATTCTGCCGGAGCTATTGACTTGATGGCTACTTTTCAGAATCTTCCAAAGAGCAGTTATGCAGATTGTAGTTTCAACGCTGGTGGTAACACAGCCAATTTTGATTTTGATACACAATTGGATCTTTCTTTACAAAGAGATTTTCCTGGAAGCTCACCTAAGCCTACCATTGAAGAAAGGCAAATATTGAATCATTCAAATGCTTCTGCGTTTTCTTTGTATGGCAGCAGTACATTGTTGAAGCCTTTATTTCCAACAAACAATTCGCATGAATCACAAAAATTATCGGAAAATACAAATATTGGTCATCAGTACGATATTAAAAAACTAAAGCAGGAAAATATCACTTATCTAGCAATTGGTCAGCCTGAACAAGTTGATGCAAAATTTCTTAACAGTCAACTTAAATTCTTTCCTACCACCGGGTCTGCTTCTGATAATAAGTCTATGGAACATGATAATGTTTTTCATTCTATGTTTGATGCACAGTCAGGTATGCATCCCACATGGACACCAAAATCAGTGTTCCAAAAAGAGAGTTCTCCATTTCCCACAAGTATTTCCTCCCACTCCAACCCTAAAAGTCAGAACTCAGAACCTCGCCACTGGTCGGATGATGCCACCTATACTTGTGATCAAAATGTAAATGATCAAAGCAATATAGATTGTGACGACTCTCCATCTAACGGTCAAAGTTGTGGTACAAGTTTTTACCATGATGTGGAAAATTGCAACACTAGTGGTGTATGTGATGAAGGCATAGGAAGCGGAAGTGATGGAAATGCCCCTTCAGCAGTTGTAGGCAAGAACAACGTTGAAAATTCTATGAACAATGATCACTATGATGGGCTTAGAGGCACAAATTCTCATCGCACCAGCCAAAGAGAAGCAGCTCTAACGAAGTTTCGACTGAAGCGAAAAGACAGATGCTATGACAAAAAGGTCCGATATGAAAGCCGGAAAAGACAGGCAGAGAATCGGCCCCGGGTGAAAGGGCAGTTTGTTCGCCAAGTACACGGTGAACTTCCAGTAGCTGATACCGGAAGTTACTGA 1941 0.4019 MGEATMQINNHHHDSVDKFLPPTMLRVLLVEADDSTRHIISALLRKCGYKVAAVRDGLKAWETLKNKSSGIDLVLTEVELPSISGFSLLTSIMELDNCKNIPVIMMSSNDSVSTVFKCMLNGAVDFLIKPVRRNELRNLWQHVWRRHTISMPPQNITFPQNKLDVAAENNAASNNSSGSVASTQKNVECSEKTSEAQDMSQLKSSSCLSNTSQAKHENSTRYERESTEYNGETGEKSTIIASKAAGYDKISTGLRLGQSYDCIETENQDEVLKTEFSKANPHTNSKIRQWNDEIEEHSAGAIDLMATFQNLPKSSYADCSFNAGGNTANFDFDTQLDLSLQRDFPGSSPKPTIEERQILNHSNASAFSLYGSSTLLKPLFPTNNSHESQKLSENTNIGHQYDIKKLKQENITYLAIGQPEQVDAKFLNSQLKFFPTTGSASDNKSMEHDNVFHSMFDAQSGMHPTWTPKSVFQKESSPFPTSISSHSNPKSQNSEPRHWSDDATYTCDQNVNDQSNIDCDDSPSNGQSCGTSFYHDVENCNTSGVCDEGIGSGSDGNAPSAVVGKNNVENSMNNDHYDGLRGTNSHRTSQREAALTKFRLKRKDRCYDKKVRYESRKRQAENRPRVKGQFVRQVHGELPVADTGSY 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05272 646 Pfam Response regulator receiver domain 27 138 IPR001789 GO:0000160
Trre14g05272 646 MobiDBLite consensus disorder prediction 465 507 - -
Trre14g05272 646 MobiDBLite consensus disorder prediction 170 216 - -
Trre14g05272 646 MobiDBLite consensus disorder prediction 170 233 - -
Trre14g05272 646 SMART REC_2 25 140 IPR001789 GO:0000160
Trre14g05272 646 SUPERFAMILY CheY-like 23 151 IPR011006 -
Trre14g05272 646 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 201 IPR045279 GO:0009736
Trre14g05272 646 MobiDBLite consensus disorder prediction 217 231 - -
Trre14g05272 646 ProSiteProfiles Response regulatory domain profile. 26 144 IPR001789 GO:0000160
Trre14g05272 646 ProSiteProfiles CCT domain profile. 591 633 IPR010402 GO:0005515
Trre14g05272 646 Pfam CCT motif 591 633 IPR010402 GO:0005515
Trre14g05272 646 Gene3D - 25 278 - -
Trre14g05272 646 Coils Coil 603 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05272 Trre-Chr14 58255265 58259822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05272 566 635 Response Regulator Gene Family AT5G24470 59.722 4.72e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Trre14g05272 Response_reg 2.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05272 K12130 - gmx:100809490 756.903