Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05270 ATGGCTGCCAACGTTAGTATGTCTCTCTCCTTCGCCGCGACAACCCCTTCTCTCCTTGGTGTTGTTAGTAGCTCCTCAAAACGATTGCTTCCATTTTCTGCGCTTCCTTATCCTTCTTTCTCGCTTCGCACCTCCAACCCTAGGGCTGTTGTCGATGGACAAACGGCAATTGTGCAAGAACAACCGAACGACGTTGTTTTCGCGCCAGAAGAAGAACAACCACGGAAGCTGCGAAATGCAACCCAACTTTACGTCTGCAACCTTCCTAGAACTTATGACACTCAACAGCTATTCAATATGTTTTCTCCTCACGGAACCGTTCTATCTGCACAGGTTTGCCGGAATGTGGAGACAGGTCAGAGTAAGGGGAGTGCTTATGTCAAGATGGGATCTTATAACGCTGCTAAAAATGCAGTAGCTGCACTGGATGGATTGGACGTTGAAGGGCGCGAAATGCGGGTTAAATTTTCAGTTCAGATGAATACTAAGAAGAATTTTGTAGAGACATTTAACACAACGCCGCTGAAAACTATATTCTATGAAGGTCCTCATAAGGTGTATGTAGGGAATCTTTCCAAGTCTGCTGCACCTGAAGACCTGAGACATCTCTTTGGTAAATTTGGAAATGTGGCTAGTGTCAGGGTGTTGCAAGATTTGAAACTGGGGAAAAGTCGTGTCTACGCCTTTGTCTCTTATCTTTCTCAGAGTGAACGTGACGCTGCTATGTCCCTCAATGGAACTGAATTTTCTGGTCGAATTCTAGTCGTTAGAGAGAGCACGGAGAAGCCCAAAACTTGA 798 0.4561 MAANVSMSLSFAATTPSLLGVVSSSSKRLLPFSALPYPSFSLRTSNPRAVVDGQTAIVQEQPNDVVFAPEEEQPRKLRNATQLYVCNLPRTYDTQQLFNMFSPHGTVLSAQVCRNVETGQSKGSAYVKMGSYNAAKNAVAALDGLDVEGREMRVKFSVQMNTKKNFVETFNTTPLKTIFYEGPHKVYVGNLSKSAAPEDLRHLFGKFGNVASVRVLQDLKLGKSRVYAFVSYLSQSERDAAMSLNGTEFSGRILVVRESTEKPKT 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05270 265 PANTHER OS02G0815200 PROTEIN 45 261 - -
Trre14g05270 265 SUPERFAMILY RNA-binding domain, RBD 181 263 IPR035979 GO:0003676
Trre14g05270 265 Gene3D - 173 265 IPR012677 -
Trre14g05270 265 Gene3D - 45 166 IPR012677 -
Trre14g05270 265 SMART rrm1_1 185 257 IPR000504 GO:0003723
Trre14g05270 265 SMART rrm1_1 82 155 IPR000504 GO:0003723
Trre14g05270 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 261 IPR000504 GO:0003723
Trre14g05270 265 SUPERFAMILY RNA-binding domain, RBD 66 159 IPR035979 GO:0003676
Trre14g05270 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 153 IPR000504 GO:0003723
Trre14g05270 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 253 IPR000504 GO:0003723
Trre14g05270 265 FunFam 30S ribosomal protein 2, chloroplastic 172 259 - -
Trre14g05270 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05270 Trre-Chr14 58243535 58244708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05270 76 262 Eukaryotic Initiation Factors Gene Family AT1G22760 29.787 6.15e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05270 - - tpra:123889530 402.519