Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05264 ATGTCAGAAGGTGCAGAGATTGACGAGCGTGTTGACCTCGATGAGGAAAATTATATGGAAGAAGAGATGGACGATGATGTTGAGGAACAGATAGATGACGATGGAGTGGATGTGGATGGGGGTGAAGATGAAAATGCTGAAGGTAGTGCTGAAGAACATGAATATGAGGAGTCGGCGGCAGAGGCTGGTGATAAAGACCAATTTACCGAAGGAGAAAAAAGTGACCGTGCCACTGAAGAAGATGACCAAAAGCCATCGCTCATTGATGACGAGGAGAAAGAGAAGCATGATGAACTTCTTTCCCTTCCTCCTCATGGTGCTGAAGTCTTTATTGGTGGACTTCCTCGGGATACACGTGACGATGATATAAGGGAATTGTGCGAGCCAATGGGTGATATTGTTGAGATTAAATTAATCAAAGACAGGGAAACTGGAGAAAGCAAGGGTTATGCTTTCGTGACTTTTAAAACAAAGGATGTGGCACAGAAGGCCATCAATGATATACATAACAAGGAATTTAAGGGTAAAACTTTGAGGTGTTCGCTGTCTGAAACCAAACACAGGTTGTTCATCGGGAACATTCCAAAAACATGGACGGAGGATGAGTTTAGGAAAGCCGTTGAGGGTGTTGGTCCCGGAGTTGAAGGCATTGACCTCATAAAGGACCCACAAAATCAAAGCAGAAATCGTGGGTTTGCTTTTGTTCTGTATTACAACAATGCATGTGCTGATTATTCACGGCAAAAGATGGCAAGTTCGAATTTCAAGCTAGATGGAAATACACCAACTGTTACATGGGCAGATCCAAAGACCTCACCTGACAATTCAGCTTCTTCACAGGTTAAAGCTCTATATGTGAAAAACATACCTGAGAATGTTACTACTGACCAACTAAAGGAGCTATTTCGTCGTCATGGGGAAGTAACGAAAGTGGTCATGCCACCTGGCAAAGCCGGAGGGAAGCGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGAGACAGAGAAATATGAAATTGATGGCCAAGCTCTTGAAGTTGTTATTGCCAAGCCTCAAGCTGAAAAAAAACCTGATGGAGGCTATGCGTACAATACTGGACTCCATCCTAACCATCTTCCACATCCTGGCTATGGTAACTTTTCCGGAAATCTATATGGCTCAGTTGGGGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATACGGCAGGGGTCCAATGCCAGCCGGAATGCAGATGGTTCCAATGGTTTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAGCCTGGTGTACAGGTGCCAGCTCCCCGACCCCGCAGAAATGACCGGGGCAATGGTCCAGGCGGTCAGGCAGGGCGTGGAGGAGGTAGTGGTAATGATGATGGAAATCGTAATAGAAGGTATCGACCCTATTAG 1449 0.4507 MSEGAEIDERVDLDEENYMEEEMDDDVEEQIDDDGVDVDGGEDENAEGSAEEHEYEESAAEAGDKDQFTEGEKSDRATEEDDQKPSLIDDEEKEKHDELLSLPPHGAEVFIGGLPRDTRDDDIRELCEPMGDIVEIKLIKDRETGESKGYAFVTFKTKDVAQKAINDIHNKEFKGKTLRCSLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVEGIDLIKDPQNQSRNRGFAFVLYYNNACADYSRQKMASSNFKLDGNTPTVTWADPKTSPDNSASSQVKALYVKNIPENVTTDQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDGGYAYNTGLHPNHLPHPGYGNFSGNLYGSVGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPAPRPRRNDRGNGPGGQAGRGGGSGNDDGNRNRRYRPY 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05264 482 SMART rrm2_1 108 181 IPR003954 GO:0003676
Trre14g05264 482 MobiDBLite consensus disorder prediction 52 102 - -
Trre14g05264 482 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 188 268 - -
Trre14g05264 482 Gene3D - 270 389 IPR012677 -
Trre14g05264 482 MobiDBLite consensus disorder prediction 8 51 - -
Trre14g05264 482 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 467 - -
Trre14g05264 482 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 187 - -
Trre14g05264 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 179 IPR000504 GO:0003723
Trre14g05264 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 352 IPR000504 GO:0003723
Trre14g05264 482 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 254 IPR000504 GO:0003723
Trre14g05264 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 359 IPR000504 GO:0003723
Trre14g05264 482 SMART rrm1_1 108 181 IPR000504 GO:0003723
Trre14g05264 482 SMART rrm1_1 283 355 IPR000504 GO:0003723
Trre14g05264 482 SMART rrm1_1 188 265 IPR000504 GO:0003723
Trre14g05264 482 SUPERFAMILY RNA-binding domain, RBD 188 275 IPR035979 GO:0003676
Trre14g05264 482 SUPERFAMILY RNA-binding domain, RBD 98 186 IPR035979 GO:0003676
Trre14g05264 482 MobiDBLite consensus disorder prediction 1 115 - -
Trre14g05264 482 CDD RRM_SF 109 181 - -
Trre14g05264 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 269 IPR000504 GO:0003723
Trre14g05264 482 Gene3D - 9 187 IPR012677 -
Trre14g05264 482 MobiDBLite consensus disorder prediction 441 482 - -
Trre14g05264 482 SUPERFAMILY RNA-binding domain, RBD 273 374 IPR035979 GO:0003676
Trre14g05264 482 Gene3D - 188 268 IPR012677 -
Trre14g05264 482 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05264 Trre-Chr14 58199715 58204219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05264 109 458 Eukaryotic Initiation Factors Gene Family AT2G23350 25.455 4.72e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05264 K13161 - gmx:100790907 706.827