Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05253 ATGCTTCTCTTTGACGCATTGTCGGCGGCACGGATCCGTGTTCCTCCTTTGAAGTTAAATCTAATTCCTAGCAGCAAGGAGTACAACGAAATAATTCTCAACAAGGAACCACATGTGTTGGTTGATGTTAGACCAGCTCACCATTTCAAGATTGTGTCACTTCCAAATTCGTTGAACATTCCATTCTCAATTTTGAAGAAAGATGAAGAGGAAAAAGGCATGGTTTCTGAATCAAGTGCGCGATTATATGTAGTATGCAGAAGGGGAAATGACTCTCAAAGGGCTGTTCAATACCTTCACAAAATGGGTTTTACTTCTGCTAAGGATACTTATTAA 336 0.3988 MLLFDALSAARIRVPPLKLNLIPSSKEYNEIILNKEPHVLVDVRPAHHFKIVSLPNSLNIPFSILKKDEEEKGMVSESSARLYVVCRRGNDSQRAVQYLHKMGFTSAKDTY 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05253 111 Pfam Rhodanese-like domain 26 105 IPR001763 -
Trre14g05253 111 SMART rhod_4 24 110 IPR001763 -
Trre14g05253 111 Gene3D - 24 111 IPR036873 -
Trre14g05253 111 PANTHER FAD-DEPENDENT OXIDOREDUCTASE 25 108 - -
Trre14g05253 111 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 24 106 IPR036873 -
Trre14g05253 111 ProSiteProfiles Rhodanese domain profile. 34 108 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05253 Trre-Chr14 58143664 58144190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05253 19 109 Sulfurtransferasese or Rhodanese AT5G55130 53.704 5.95e-29 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05253 K11996 - gmx:100801820 159.073