Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05243 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGGTTGCATAGAGGTCCATGGACTTCTCGTGAAGATGCATTGCTCACCAAATATATTCAAGCTCATGGAGAAGGCCTGTGGAGATCACTTCCAAAGAGAGCTGGGCTTCTTAGATGCGGAAAAAGTTGCAGACTTCGATGGATGAACTATCTGAGACCGGATATAAAGAGAGGAAACATAACTCCAGATGAAGATGATCTCATTATAAGAATGCATTCACTTCTTGGAAATAGATGGTCTCTTATCGCCGGAAGGTTACCCGGGCGAACAGATAATGAGATAAAGAATTATTGGAACACACATCTCAGTAAAAAGCTCCAAAAACAAGAGCCGCTACATAAGAAGAAGAATAAAAAGATGCAGAAGAATGAGAACAAAGTCATAACCAAAGTAGCAGAAGATTCAGAGAAGACCTTAGTTTATATGCCAAAGGCTATAAGGATCAAGAAGACTTTATCATCTATAATACCAAGAACTGATGGTACCTTAAACTTGGAATCCAACTCAGTAACAACAAGCCAAGAGGAAGAGCGAAAAGCAGAAACAAATGAGAGAGACAATGATGGATTTGGATTGTTCTTTGGTGAACAGTACCATGAAGATTTGGTCAACAATGATGACATGGAATGCCAATCTGGTTTTCTTGAGAAGATGTATGAAGAGTACTTGCAGCTTTTGAAGAATGAAGAAAATCATGAAAAATTGTTAGACTCTTTTGCTGAGTCCTTATTGGCGTGA 768 0.3906 MGRAPCCSKVGLHRGPWTSREDALLTKYIQAHGEGLWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLQKQEPLHKKKNKKMQKNENKVITKVAEDSEKTLVYMPKAIRIKKTLSSIIPRTDGTLNLESNSVTTSQEEERKAETNERDNDGFGLFFGEQYHEDLVNNDDMECQSGFLEKMYEEYLQLLKNEENHEKLLDSFAESLLA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05243 255 MobiDBLite consensus disorder prediction 182 196 - -
Trre14g05243 255 FunFam Transcription factor TT2 70 140 - -
Trre14g05243 255 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre14g05243 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre14g05243 255 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre14g05243 255 CDD SANT 16 61 IPR001005 -
Trre14g05243 255 SMART sant 66 114 IPR001005 -
Trre14g05243 255 SMART sant 13 63 IPR001005 -
Trre14g05243 255 MobiDBLite consensus disorder prediction 177 196 - -
Trre14g05243 255 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 208 - -
Trre14g05243 255 Gene3D - 14 66 - -
Trre14g05243 255 Gene3D - 71 142 - -
Trre14g05243 255 FunFam Myb transcription factor 11 67 - -
Trre14g05243 255 CDD SANT 71 112 IPR001005 -
Trre14g05243 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre14g05243 255 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre14g05243 255 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre14g05243 255 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05243 Trre-Chr14 58083646 58084607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05243 1 116 MYB Transcription Factor Family AT5G49330 76.724 1.01e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g05243 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05243 K09422 - gmx:778044 332.798