Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05237 ATGGAATCAACAAGGCGCATGTTGTGGGATGAACAAGAGAAATCCATGGTTGGAGCTGTTCTTGGTGGTCGTGCTTTGGATTTTTTGATAACAAACTGTTTATCAAATGAGAGTGTGTTAACTGCTGTTGGTGCTACTGATGATTCTCTTCAAAACAAGCTCTCTGATCTCGTTGAAAATTCATCCAATTTCAATTGGAACTACGCTATTTTCTGGCAACTTTCTCAGTCAAAATCCGGTGATTATTTTCTTGGTTGGGGAGATGGGTGTTGCAGAGAACCAAGTGAAGAAGAAGAACAAGAAAGTGGTGGTGGAGTTAGAGGAATTCTCACTCTTGGCATGGAGAACAAAGAAGAAGAAGAAGAAGATGGGATGAAGCAGAACATGAGAAAGAGGGTTCTGCAGAAGCTACACACAGCTTTTGGTGGTTCAGATGAAGACAATTACGCTTTTGGCCTTGACCGTGTAACCGACACAGAGATGTTCTTTTTAGCTTCTATGTACTTTTCTTTTCCAAAAGGGTATGGTGGACCCGGTAAGTGTTTTGCTTCTGCTAAACATTTATGGTTCAAATCTGTTTCTGATTACTGCGTTCGTTCTTTCTTGGCTAAATCTGCTGGAATTCAAACTGTTGTTTTACTACCTACTCATTTTGGTGTTCTTGAGTTGGGTTCTGTTAGAATGTTACCTGAAAACTTTGAATTGTTAAACACTGTTAATTCTTTGTTTTCAATTTCAACTTCAATTTCCACCACACAATCATCATCATTGTATCCTAGGGTTATCAATGAAGGAAGAGATGAAAGTGGTATTTCTAATGGTGTTGAAGTTCCAAAGGTTGTTTTGAGTTTGAACAATAATAGTCGTACACATTTTAGGGAGAAACTTGCTATTAGAAAATTGGATCATAGCAACAACATTAACTTTCCTAGTGTTAGAAATGGTGTTTGTGGTTCTACTAGTTGGGGAGTGAATCAAGGTCAAGGTGAAATTTTTGCTCCTAATGGTGTGAGAAAGGATTTTAGGCTTAACAATAATAGCAACTATCAACCACAAAGACAGGTTCAAATGCAAATGGAAATTGATTTTTCGGGAGCGAATTTGAGGGCTAATTCTGTGAGACCGGTTATTGGTGAACCGGAACTTGTTGCTGCTGATGTTGAGGCTGATCAACCTAGTGATGGAAGGAGGCCGAGGAAGCGCGGAAGGAAGCCTGCTAATGGAAGGGACGAACCGCTTAATCATGTGGAGGCGGAGAGACAAAGGCGTGAGAAGCTTAATCAGCGTTTTTACGCTTTAAGAGCTGTTGTTCCTAATATCTCCAAGATGGACAAGGCATCCTTACTTGGTGATGCCATTGCTTACATCAATGAGCTTCAGGCGAAACTCAAGGTCATGGAGTCTGAGAGAGAGACATTTGGAGGTAGCACTTCAAAGGATGGATCGGGCAACTCGAGCTCAGAAAATCGTCGTCAGAACATTAGAGTTCCTCCTCCTGATGTCGATATTGAAGCTTCTCAGGATGAGGTAATCGTGAAAGTGAGTTGTTCTCTTGATACTCATCCTGTTTCGAAAGTAATGGAAACATTCAAAGAGGCACAAATCAGTGTCGTGGAGTCGAAACTCGCTGCTGCAAATGATACTATCTACCATACTTTTGTAATTAAGTCACAAGGATCTGAACAGCTTACTAAGGACAAGTTGATTGCAGCTTTTTCCCGAGAATCCAACTCTTTACAGATATAA 1746 0.4055 MESTRRMLWDEQEKSMVGAVLGGRALDFLITNCLSNESVLTAVGATDDSLQNKLSDLVENSSNFNWNYAIFWQLSQSKSGDYFLGWGDGCCREPSEEEEQESGGGVRGILTLGMENKEEEEEDGMKQNMRKRVLQKLHTAFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPKGYGGPGKCFASAKHLWFKSVSDYCVRSFLAKSAGIQTVVLLPTHFGVLELGSVRMLPENFELLNTVNSLFSISTSISTTQSSSLYPRVINEGRDESGISNGVEVPKVVLSLNNNSRTHFREKLAIRKLDHSNNINFPSVRNGVCGSTSWGVNQGQGEIFAPNGVRKDFRLNNNSNYQPQRQVQMQMEIDFSGANLRANSVRPVIGEPELVAADVEADQPSDGRRPRKRGRKPANGRDEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKVMESERETFGGSTSKDGSGNSSSENRRQNIRVPPPDVDIEASQDEVIVKVSCSLDTHPVSKVMETFKEAQISVVESKLAAANDTIYHTFVIKSQGSEQLTKDKLIAAFSRESNSLQI 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05237 581 Pfam Helix-loop-helix DNA-binding domain 414 460 IPR011598 GO:0046983
Trre14g05237 581 MobiDBLite consensus disorder prediction 404 418 - -
Trre14g05237 581 MobiDBLite consensus disorder prediction 470 500 - -
Trre14g05237 581 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 410 459 IPR011598 GO:0046983
Trre14g05237 581 Gene3D - 404 473 IPR036638 GO:0046983
Trre14g05237 581 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 50 243 IPR025610 -
Trre14g05237 581 MobiDBLite consensus disorder prediction 383 418 - -
Trre14g05237 581 FunFam Transcription factor bHLH13 403 476 - -
Trre14g05237 581 CDD bHLH_AtAIB_like 407 471 - -
Trre14g05237 581 SMART finulus 416 465 IPR011598 GO:0046983
Trre14g05237 581 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 413 473 IPR036638 GO:0046983
Trre14g05237 581 PANTHER MYC 38 571 IPR045084 GO:0003700|GO:0006355
Trre14g05237 581 MobiDBLite consensus disorder prediction 471 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05237 Trre-Chr14 58040887 58042632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05237 6 580 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 48.214 7.09e-174 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre14g05237 bHLH-MYC_N 1.1e-50 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05237 - - tpra:123889557 1042.34