Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05235 ATGGAAGCCGAAACTCGCCGGAAAGTTGAAGACATGGTGTTGGATATACTTCAAAAATCCGACATTCAAGAAACCACTGAGTTCACCATCCGAGTTGCCGCCTCTGAGCGACTCGGTATCGACCTCTCCGGTCCAGAGACCAAACGCTTTGTCAGAATCATTATCGAGACTTATCTTCTCTCCATCGCCACCGCTCAGAAATCACCGCCACAACTCTCCACAGAGGTGCCGGTGACACCTAATGAACCACCACAAGTGTCCAATGAACCGGTCAATGTAACCGCACCCAAGGAACAGCCACAAGAGTTGAACAAGGTGGCGGGAGTGAAACGCAAAAACGATGACTCCGATAAAGTCATTTGTCAGTTATCAAGCAGGAGGAATGTGGCGGTTCGAGATTTCAAAGGGATGACATTGGTGTCGATTAGGGAGTTCTATAATAAAGATGGAAAACAGCTTCCCACTTCTAAAGGGATAAGTTTATCTTCTGAACAATGGTCAACCTTCAAGAATTGTGTTCCCGCTATAGAGGAAGCTATCACAAAGTTGGAAGGAAGGATAAGATCAGGGATTAATGGCAAGAAAAATGGAGAAGTTGTAAGTTCAGTTATTGATGTTTCTGTTGAGCCTGTCACTATTGAGCCCGTTGCTATTGAGCCCGTCGCTATTGACCCTGTCCCTATTGAGATCGTCCGTTTTGATGGAAAGAATTATCAAGTTTGGGCTGAACAGATGGAATTATTCTTGAAACAGTTAAAGATCAATTATGTGCTTACCGAACCATGCCCAAATGCTACAATAGGGGAAAAAGTTGCAAGTGCTGGGGAAACCAAAGCTGCTGAAAAGAGATGGGTAAATGATGATTTAACGTGTCGTCGTAACATCTTGAGTCATTTATCTGATAATCTATTCAACAAGTATACAAATACAAAAATGAATGCTAAGGATTTATGGGAAGACTTAAAGTTTGTTTATCTGTATGAAGAATATGGAACCAAGATATCTCAGGTGAAAAAGTATATTGAATTTCAAATGGTTGATGAAAAAGCAGTTCTTGACCAAATTCAAGAACTTAATTGCATTGCAGACTCTATTGCTGCTGTTGGAATGCCTATTGAGGAGAACTTCCATGTTAGTGTCATCGTTTCAAAGCTTCCACTATCCCGGAAAGACTTGTCCATCAAGTTAATGCGTGAGGAGCATCTACCTTTCTGGAAGTTAATGGAATGCATAACAAAAGAGGAAGAATCTCGCAATGGAGTCAAACAAATGGGTGAACTTCCTTCTGATAGTGCAAGATTTCACCGTGCCAATGAAGGGGGTTCGAGCGGGGCTGACATTAAGCCACCACCAGGTTTTCAAAGGAAGTATGAACCTAATAGCAAGAACGCATCATGTTATATTTGTGGCCAGAAGGGACATTTTTCCAAAAATTGTTGGAGATGGCTGTAA 1452 0.4201 MEAETRRKVEDMVLDILQKSDIQETTEFTIRVAASERLGIDLSGPETKRFVRIIIETYLLSIATAQKSPPQLSTEVPVTPNEPPQVSNEPVNVTAPKEQPQELNKVAGVKRKNDDSDKVICQLSSRRNVAVRDFKGMTLVSIREFYNKDGKQLPTSKGISLSSEQWSTFKNCVPAIEEAITKLEGRIRSGINGKKNGEVVSSVIDVSVEPVTIEPVAIEPVAIDPVPIEIVRFDGKNYQVWAEQMELFLKQLKINYVLTEPCPNATIGEKVASAGETKAAEKRWVNDDLTCRRNILSHLSDNLFNKYTNTKMNAKDLWEDLKFVYLYEEYGTKISQVKKYIEFQMVDEKAVLDQIQELNCIADSIAAVGMPIEENFHVSVIVSKLPLSRKDLSIKLMREEHLPFWKLMECITKEEESRNGVKQMGELPSDSARFHRANEGGSSGADIKPPPGFQRKYEPNSKNASCYICGQKGHFSKNCWRWL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05235 483 Gene3D - 432 481 - -
Trre14g05235 483 Pfam DEK C terminal domain 5 59 IPR014876 -
Trre14g05235 483 FunFam RNA polymerase II transcriptional coactivator KELP 111 184 - -
Trre14g05235 483 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 186 IPR045125 GO:0003713|GO:0060261
Trre14g05235 483 Pfam gag-polypeptide of LTR copia-type 284 419 - -
Trre14g05235 483 Gene3D Transcriptional Coactivator Pc4; Chain A 110 188 IPR009044 GO:0003677|GO:0006355
Trre14g05235 483 MobiDBLite consensus disorder prediction 418 455 - -
Trre14g05235 483 Pfam Transcriptional Coactivator p15 (PC4) 121 171 IPR003173 GO:0003677|GO:0006355
Trre14g05235 483 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Trre14g05235 483 Pfam Zinc knuckle 466 479 IPR001878 GO:0003676|GO:0008270
Trre14g05235 483 SUPERFAMILY ssDNA-binding transcriptional regulator domain 120 182 IPR009044 GO:0003677|GO:0006355
Trre14g05235 483 MobiDBLite consensus disorder prediction 69 94 - -
Trre14g05235 483 SUPERFAMILY Retrovirus zinc finger-like domains 452 479 IPR036875 GO:0003676|GO:0008270
Trre14g05235 483 ProSiteProfiles Zinc finger CCHC-type profile. 466 479 IPR001878 GO:0003676|GO:0008270
Trre14g05235 483 SMART c2hcfinal6 465 481 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05235 Trre-Chr14 58017441 58020736 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Trre14g05235 Retrotran_gag_2 2.5e-13 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05235 - - psat:127128865 642.884