Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05234 ATGGAGGCGAAGGGAGGCGATGTCGCCGGAGAGAACCAGATGCCGCCACGGCTTAAGAATCAAATCAAGAACAAAATTGAAGAGGCAGAACAACACAGGTCCAACAATAAGAGGAAGAAGATCGTCGCCGATCTAAGTAACGGATCAGACTCGGAGCTGAATGGAAACTCGATGAGAAAGAAGAAGAAACCGATTGATCAAGAGAAGGAAGGTGATTGTTGCAAGGGATTAATTGATGTGTATAAGGTCAACAAAGCCAAAAATGGAGTTAGAGTTAAAGATACCAAAAAACAGGGTTTATCTAGCAAAACCAAGGAGAGTGGAAGTTTGATGTGTCATCAGTGCCAACGGAATGATAAGAGTGGCGTCGTCTTTTGCTCGAGTTGCAACAGAAAGCGCTATTGTTACGAGTGCATTGAGAACTGGTACCCAGGAAAAACCCGAGAGGACTTCAAGAATGCGTGTCCGTTTTGTCTGGGCAACTGCAACTGCAAAGCTTGTTTGCGGGAGTTTCCTGTGCTAATGGACCGGGAAGTAAATGTCAGTGTCAAATTACAGCGGCTGCTGTACTTGCTATCTAAAGCTCTTCCAGTTCTGAGGCATATCCACAGGGAGCAGAGCTTGGAACTAGAGACTGAAATCAAAATAAGAGGTAAGCAACTGCAAGAAGTTGACATAACAAGAACAAAGCTAGATGAAAGTGAGCGCTTGTACTGTGACAATTGCAGTACATCCATATATGGATTTTACCGTAGCTGCACCAACACAAATTGCTCTTATGATCTCTGTCTTGTGTGCTGTCAAGAGCTCAGAGAGGGTTACCAACCTGGAGGCATGGAGGCTGGAACATCTCATGAAAAATTTGAAGAGATTTTTCACAATCAGAATTCAACAAAAAATCAGAGTAAAACACGTCGTAAAAGATATGACTGGGAAAGCGAACTTGCATCTACCAGTGTTCCTTCTCAGGCTGACATGTTCTCTCCCTTCCCAGAATGGAAAGCTAATCCTGATGGTAACATTCCATGTCCTCCAAAGCAGCGTGGAGGTTGTGGTACTGCATTGCTAGAACTGAGACGCATCTACAAAGCTAATTGGGTAGCAAAACTGCTAAATAATGCTGAGGATCTCACTAGAAATTACACGCCTCTGGATGTGGATATTACTGAAAAGTGTTCTTTATGTCAGCTAAATTTGTTTGAAGGAAAAGTCAACCCTGACGTCAGGAGGGCAGCATTCCGGGATGACAGTAAAGATAACTTCTTATATAGTCCAAATGCCGTTGACATTTCTGATGATGAGATCGAACACTTTCAGAGGCACTGGATGAGGGGTGAACCTGTGATTGTGAGAAATGTTCTGGCCAAAACGTCTGGTCTTAGTTGGGAACCAATGGTTATGTGGAGGGCCCTCAGAGAAACAGGTTCCAAAGCGAAGTTCAAAGAGGAAACACAAAGTGTTAAGGCTGTAGATTGCTTGGATTGGTGTGGGGTTGAAATAAATATACACCAATTTTTTAAAGGCTATGTAGAAGGCCGAATGCATAAAAATAAGTGGCCAGAAATGTTGAAATTGAAAGATTGGCCTTCATCGACATCTTTTGAAGAGCGCTTGCCTAGGCATGGCGCTGAATTCCTTGCTGCACTTCCGTATATGGACTACACTGATCCAAAATCAGGTCTTTTAAATTTTGCCAGTAAACTTCCTGCTGGCTCATTGAAACCAGATTTGGGACCCAAAACATATATTGCTTATGGATTTTCTGAAGAGCTTGGCCGAGGAGATTCTGTGACAAAACTGCACTGCGATGTTTCTGATGCGGTGAATGTGTTGACACACACAAACAAGGTAAATATAGCTCCCTGGCAGAGAGAAAGCATAAATAAATTGAAGAAGGAATATGGTAAAGAAGACAATTTTGAACTTTATTGTGATGCTTTAGATAATGTTGATGGAAAATCTAAATCCAAAGCATTGGACCATGATCAAAAGGCAGGGAATGGAGTTAACCGGATTTCACCAAGTAGCCAAGCAGAAAAGTGCATTTCATCAATATCCGAAGACTTGAGTGGAAAGTTAGAAACACAGAACGCAGAACAATGTGATGATAACGGAAAGGGCTCTTGTACCTATAGAAATGTTGCTGTAAGGAACTTCTCTGAGGATGATAGTGTTAGCAATAGCATAACATCATCCGCTGAAGTTTTGGATTATTCCAGGACTTCTGACCTGGAGCATCTTCAATCTGCAACCAGCTTAGCATCAAATAATGCAAACATAAAGAAAGACAGAACAAGGGTTGATTTTTCAGATGGTAATGTGTCTGGTGATCCCAAGATTGAATCAAAACAAGGCATGGGGAGAGATTCTTTGGGCATTGATAATGGAGCTGCGACTGTCCTTGGTGGTGCTGTTTGGGACATCTTCCGTCGGCAAGATGTCCCAAAGATAATTGAGTACTTAAGAAAGCAAAAGAAGGAATTTCGCCATATCGACAACAAACCTGTTGATTCAGTTATACATCCCATTCATGACCAGACTATATTCTTAAATGAAAGACACAAGAAACAGCTAAAAAGAGAATTTAATGTTGAACCATGGACTTTTGAGCAACACCTTGGTGAGGCTGTTTTCATTCCAGCAGGATGTCCTCATCAAGTGAGAAACAGACAGTCTTGTATGAAGGTTGCACTTGACTTTGTTTCTCCGGAAAATGTTGGGGAATGTTTACGACTAACTGAAGAGTTTCGTTTACTCCCGAAGAACCACAGGGCCAAGGAGGACAAATTGGAGGTTAAAAAGATGACCCTTTATGCTGTGAGTAATGCTGTTAGACAATTTAAAGAACTGGTTGATAGCCAATGA 2865 0.4192 MEAKGGDVAGENQMPPRLKNQIKNKIEEAEQHRSNNKRKKIVADLSNGSDSELNGNSMRKKKKPIDQEKEGDCCKGLIDVYKVNKAKNGVRVKDTKKQGLSSKTKESGSLMCHQCQRNDKSGVVFCSSCNRKRYCYECIENWYPGKTREDFKNACPFCLGNCNCKACLREFPVLMDREVNVSVKLQRLLYLLSKALPVLRHIHREQSLELETEIKIRGKQLQEVDITRTKLDESERLYCDNCSTSIYGFYRSCTNTNCSYDLCLVCCQELREGYQPGGMEAGTSHEKFEEIFHNQNSTKNQSKTRRKRYDWESELASTSVPSQADMFSPFPEWKANPDGNIPCPPKQRGGCGTALLELRRIYKANWVAKLLNNAEDLTRNYTPLDVDITEKCSLCQLNLFEGKVNPDVRRAAFRDDSKDNFLYSPNAVDISDDEIEHFQRHWMRGEPVIVRNVLAKTSGLSWEPMVMWRALRETGSKAKFKEETQSVKAVDCLDWCGVEINIHQFFKGYVEGRMHKNKWPEMLKLKDWPSSTSFEERLPRHGAEFLAALPYMDYTDPKSGLLNFASKLPAGSLKPDLGPKTYIAYGFSEELGRGDSVTKLHCDVSDAVNVLTHTNKVNIAPWQRESINKLKKEYGKEDNFELYCDALDNVDGKSKSKALDHDQKAGNGVNRISPSSQAEKCISSISEDLSGKLETQNAEQCDDNGKGSCTYRNVAVRNFSEDDSVSNSITSSAEVLDYSRTSDLEHLQSATSLASNNANIKKDRTRVDFSDGNVSGDPKIESKQGMGRDSLGIDNGAATVLGGAVWDIFRRQDVPKIIEYLRKQKKEFRHIDNKPVDSVIHPIHDQTIFLNERHKKQLKREFNVEPWTFEQHLGEAVFIPAGCPHQVRNRQSCMKVALDFVSPENVGECLRLTEEFRLLPKNHRAKEDKLEVKKMTLYAVSNAVRQFKELVDSQ 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05234 954 Pfam JmjC domain, hydroxylase 803 900 IPR003347 -
Trre14g05234 954 ProSiteProfiles Ig-like domain profile. 579 726 IPR007110 -
Trre14g05234 954 SUPERFAMILY Clavaminate synthase-like 435 937 - -
Trre14g05234 954 MobiDBLite consensus disorder prediction 655 674 - -
Trre14g05234 954 CDD cupin_RmlC-like 841 889 - -
Trre14g05234 954 SMART cupin_9 538 917 IPR003347 -
Trre14g05234 954 MobiDBLite consensus disorder prediction 767 788 - -
Trre14g05234 954 Gene3D Cupin 426 926 - -
Trre14g05234 954 ProSiteProfiles Zinc finger RING-type profile. 112 158 IPR001841 -
Trre14g05234 954 Coils Coil 19 39 - -
Trre14g05234 954 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 109 170 IPR018866 -
Trre14g05234 954 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 23 951 IPR045109 GO:0032454|GO:0033169
Trre14g05234 954 MobiDBLite consensus disorder prediction 21 45 - -
Trre14g05234 954 ProSiteProfiles JmjC domain profile. 557 917 IPR003347 -
Trre14g05234 954 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05234 Trre-Chr14 58003034 58014523 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre14g05234 JmjC 3.3e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05234 K15601 - vvi:100258626 1063.91