Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05218 ATGGACATCTTGAAGTTCCTCTTTCACTTGTTCATATTATTTCCTGTCATATATACCGCAGAAGATTATTGTCAAAATTCTTGGTGTAGTGAGAATAACATCCTTATTCGTTTTCCTTTTCAATTAGAAGATGAAGTTGATCAATATCCTTATTGTGGCTATCCTGGTTTCAGCTTAACTTGTACTAATGATAGCAAAACAGTTGTAACACTTCCTTATTCAGGAGTTTTCTATGTTCGCAGAATCGATTATCTCGGACACCACATACAAGTCTATGACCCTCATCATTGCCTTCCAAATCGTCTTCTAAGCCTCAACCTTTCAGGTTCACCTTTCGTTACCGAATTTCTTACCAACTACACCCTCTTGAGTTGCTCAACTCCGAACCTAGGATCGCAATTCACACCCGTTGACTGTCTTAGCAATTCTACACATTTTGTGTCAGCTATTCCTTCTTTGAGCTTCACCAATTCATTGCCTCAGTCTTGCCATGTTATTAGAAATCTCTCAGTTCCAGTTACAACATCATATCCGGAAATTCTCAGTGAAGATCTTCAACTAACATGGTCTTCACCTGATTGTAGATATTGTGAATTACTAGATAGCATGTGTGGATTTGAGAGCAGAAATAGTAATCATGTTCGTTGTTTCCCTAATCACCAAGCGGACCGTTCACAAGATGCTCATTCACATGGTAGTCTTTTGGTTTCAAGAATCATCATATTATCTATTGGGGGAATAGCTATGTTGTGCGCAATTGGGATAGGATGCTTAACGCACTTCAAGCATAGAAGAAGGACAATATCGGATGAACCTGCCATTGACATTACCATTACAAGGATGAGAATGGGTCTGGATGAGTCAACAATTGAGTCTTTTGAGAAGATTGTATTAGGGGAGAGTCGAAGACTTCCGGGAGTAGGACACACTGATGGAACCGGATGTTGTTCAATATGCCTATCAGAGTACAATGGTAAGGACATAATCAGATGCATTCCTGAATGCAAACATTGTTTCCATGCTCACTGCATCGATGAATGGCTTCGCATGAATGCTACATGCCCGATTTGCCGCAACTCTCCCTCCCCTTGTCATTCTCTTCTTCATATATCATAA 1116 0.3996 MDILKFLFHLFILFPVIYTAEDYCQNSWCSENNILIRFPFQLEDEVDQYPYCGYPGFSLTCTNDSKTVVTLPYSGVFYVRRIDYLGHHIQVYDPHHCLPNRLLSLNLSGSPFVTEFLTNYTLLSCSTPNLGSQFTPVDCLSNSTHFVSAIPSLSFTNSLPQSCHVIRNLSVPVTTSYPEILSEDLQLTWSSPDCRYCELLDSMCGFESRNSNHVRCFPNHQADRSQDAHSHGSLLVSRIIILSIGGIAMLCAIGIGCLTHFKHRRRTISDEPAIDITITRMRMGLDESTIESFEKIVLGESRRLPGVGHTDGTGCCSICLSEYNGKDIIRCIPECKHCFHAHCIDEWLRMNATCPICRNSPSPCHSLLHIS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05218 371 CDD RING-H2_EL5-like 315 358 - -
Trre14g05218 371 SUPERFAMILY RING/U-box 315 361 - -
Trre14g05218 371 ProSiteProfiles Zinc finger RING-type profile. 316 358 IPR001841 -
Trre14g05218 371 SMART ring_2 316 357 IPR001841 -
Trre14g05218 371 Pfam Wall-associated receptor kinase galacturonan-binding 24 93 IPR025287 GO:0030247
Trre14g05218 371 Pfam Wall-associated receptor kinase C-terminal 172 218 IPR032872 -
Trre14g05218 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 363 IPR013083 -
Trre14g05218 371 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 362 IPR046948 -
Trre14g05218 371 Pfam Ring finger domain 316 358 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05218 Trre-Chr14 57927964 57929537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05218 24 363 C3H Transcription Factor Family AT2G46495 39.886 3.13e-77 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05218 - - tpra:123889576 718.768