Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05213 ATGGGAACTTGTTTCTCATCGGGGACACCAGCCGCCGGAGCTGGAAAATTCTATGAGTGTCATCTTTGTGGCAAGGATTTTCATTCAGAGAATGCATTCAAAAATCATCAAACTGATTCTCATCCAGAGGCGGTCTATGAATGCTTCAAATGCATTCGAAAATATGAGATAAAAGCCGAGAGAGAAATTCATGGTAATGCAAATGAATGTTCAAAACGTTAG 222 0.4009 MGTCFSSGTPAAGAGKFYECHLCGKDFHSENAFKNHQTDSHPEAVYECFKCIRKYEIKAEREIHGNANECSKR 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05213 73 ProSiteProfiles Zinc finger C2H2 type domain profile. 18 41 IPR013087 -
Trre14g05213 73 Pfam Zinc-finger double-stranded RNA-binding 18 37 IPR022755 -
Trre14g05213 73 ProSitePatterns Zinc finger C2H2 type domain signature. 20 41 IPR013087 -
Trre14g05213 73 Gene3D Classic Zinc Finger 6 71 - -
Trre14g05213 73 SMART c2h2final6 18 41 IPR013087 -
Trre14g05213 73 SUPERFAMILY beta-beta-alpha zinc fingers 15 64 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05213 Trre-Chr14 57909996 57910217 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre14g05213 zf-C2H2_jaz 3.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05213 K09228 - tpre:106656189 46.595