Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05202 ATGGAACAAGAAAAGAGCCAGACGATGTACAATCTCTTCGTTAAGCATTTAGACGGTAAAACCCTAACCCTATTATTCCCTTCTCCGATCCTTTACGCAACTTCGATCAAGGATCGTCTCTTCCAACTCACAGGAATCCCAACCCAACACCAACGCCTCGTCACCGGTTTCCGCCACCTCAACGACGACAAATCAACAATATGTTGTTCGCCGGAAGGAGGGAACATGTTCCCATCTGTGCGTCTTCTTCTTCGTCTGAAAGGTGGAAAAGGAGGATTCGGATCGCTGTTGCGTGGAGCAGCGACGAAGGCAGGGCAGAAAAAGACGAACAATTTCGATGCGTGTAGGGATATGAGTGGAAGAAGGTTGAGACATGTGAATGCTGAGAAGAGATTGGAGGAGTGGAGAGCAGGTGAAGAAGATAGAAAGCTTGAGAAGGTTGCGGAGGAGTTTCTGAAGAAACAGATGAAGAAGAATAAAGGTAAGGGTAAGAATGGTGATGTTGATGGTGAAGCTCAGAAGTATGTAGCTAAATATAGGGAACAATCTGAACGTTGTGTTGCGGAGGTTGCTTTGTCTGTTCAGGATTCTCTCAGAAATTCTAAGCGTAAATCTTCGCCTACATCAGAAGCTTCTCTTCCTAGTGATCCCAAGAAATTGAAGATATGGATGGGGAAGAGGACATTGAATGAAAGTGATGATTCTGATGAAGATGTTGATAATGATGAGGGGGAAACCGAGAAATCTGTTCTGTTAAATAGTCAGAATGAGTCTGGGTTAAATAAGGCTGAAGATAGTTCTGATTCTGTGAATGGTCTAAAGCGGGATGGAGAATCTTCTGGGGTCGGCTCGTGTGAGAGTGGATCTGAAGAAGAGAAGGAAACTGTTGAAGAAGGAAAAGTGGAAACTGTTGGAGGATCCCAGAGTAGTGAAACTATTAAGGAAAAACTGAGTGTTGCTGCTGAACCCATGGTAAATGATGAGGTGTTGGAGGCTAATGCGGTGCCTTGTTCAGATGCGTTGGAGTATGAAATTAGTGCTCAAGATAATGGCTGTCAGGATTACAAGGTTGATGGCACTGTTACTCAAGCCTCAAATATTGTGAGTTCTGAAATTGTGCCCAATGACATGGAAATTGATGGTTCTCTTGAGCATAAAACGGCTGACATTGAAGAAAGTTTGCCAAGCACTAGTGTTCCTGCAAAGGAGGAGCCTCTGAATTTTGATGATTTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCTTGGAAAATTTGAAGACTGAACTCCAGTCACGTGGGCTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCAAGGCTTTTCCTTTTAAAATCGACTCCCGTGGATAAACTTCCGAAGAAACTGCTAGCAAAGAAATGA 1401 0.439 MEQEKSQTMYNLFVKHLDGKTLTLLFPSPILYATSIKDRLFQLTGIPTQHQRLVTGFRHLNDDKSTICCSPEGGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWRAGEEDRKLEKVAEEFLKKQMKKNKGKGKNGDVDGEAQKYVAKYREQSERCVAEVALSVQDSLRNSKRKSSPTSEASLPSDPKKLKIWMGKRTLNESDDSDEDVDNDEGETEKSVLLNSQNESGLNKAEDSSDSVNGLKRDGESSGVGSCESGSEEEKETVEEGKVETVGGSQSSETIKEKLSVAAEPMVNDEVLEANAVPCSDALEYEISAQDNGCQDYKVDGTVTQASNIVSSEIVPNDMEIDGSLEHKTADIEESLPSTSVPAKEEPLNFDDFNSAAELEVLGLENLKTELQSRGLKCGGTLQERAARLFLLKSTPVDKLPKKLLAKK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05202 466 Gene3D - 2 91 - -
Trre14g05202 466 ProSiteProfiles Ubiquitin domain profile. 10 89 IPR000626 GO:0005515
Trre14g05202 466 MobiDBLite consensus disorder prediction 196 313 - -
Trre14g05202 466 MobiDBLite consensus disorder prediction 248 267 - -
Trre14g05202 466 Pfam Silencing defective 2 N-terminal ubiquitin domain 10 160 IPR024974 -
Trre14g05202 466 Pfam Replication stress response SDE2 C-terminal 397 465 IPR025086 -
Trre14g05202 466 PANTHER SPLICING FACTOR SF3A-RELATED 11 465 - -
Trre14g05202 466 MobiDBLite consensus disorder prediction 196 213 - -
Trre14g05202 466 SUPERFAMILY Ubiquitin-like 6 69 IPR029071 -
Trre14g05202 466 Coils Coil 412 432 - -
Trre14g05202 466 CDD Ubl_ubiquitin_like 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05202 Trre-Chr14 57871916 57874207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05202 383 465 C2H2 Transcription Factor Family AT5G06160 42.857 3.98e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05202 K25059 - gmx:100781694 533.487