Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05200 ATGGAGGGTTTTCGCCGGATTCTTGTCGGGAAGGAAAGTTTGGACATTTCTCAGAGAAGACAGAGCTTAAGAGATGAAAACGACCGATCAAGACGACGCTGGTGGTTTGAGAATTGGAGATCAGAGTCATCTTTTGGTATAGAGGAAAAAGATTATGTAAACAAAAGAAACGAGAGACCAAGTGTAAGTTCTGTTTTGAAGAGTATTGGAAGAAGACTAGAGAGTGGATTAGAGAAGATGAAGAAATTCAGAAGATCGTCTTCAGCAGTTTCTTATATTTTTTTTGAAGAATCTTCAGCAGTTATGCACAAAATTCTTGATCCAAAGGGGCCAATGCTTCAGAAATGGAACCAAATCTTTGTAATCACATGTGTTATGGCAGTTTCTGTGGACCCTCTTTTCTTTTATATTCCAGTGATTGTCGGAAAAAACAAATGTCTTGATTTGGATGAACCGTTGCAGACTATTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACGTTATTTGCATCATCTTTCGATTTAGAACTGGATTTCTTGCGCCTTCTTCTCGTGTTTTTGGAAGAGGTGTACTCGTTGGCGATCCTGTCGCCATAATGAAACGATATTTGAGTTCTCATTTCATCATCGACATTCTTTCAATTATTCCACTTCCACAGGTTATTGTTTTGGCTATAATTCCACACTTGAAAAGCTCAAGGCCAGTTTTGGCGAAGGATTTTTTGAAGTATACAGTATTAATTCAGTATGTGCCAAGACTATTGCGGATTCGTCCACTATACGAAGAAGTAACTAGAACTTCAGGCATATTGGCAGAGACAGCATGGGCTAGGGCTGTCTTCAATCTTTTACTCTACATGCTAGCCAGTCATGTGGTTGGAGCTAACTGGTATCTACTTTCGGTAGAATCACAAGTGCGATGTTGGCGCAGAGAGATGAACAATGATTCCCTCTTTCATGCATCATATTTGGGATGTGGACCGCGAAATGAAAGAGTCTTCCCACTTCTCAATAGTACATGTATTTTTGTCGACCCTGATGAAATCAAGGACACAAAGACCTTCAATTTTGGAATATTTTCTGATGCTCTACAATCACTTGTGGTAGATTCAACCACGAAATTTGCTCAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGGGCAATTTAAGTTCTCTTGGACAAAACCTCAAGACAAGTACTTACCTCCTGGAGATAGCCTTTGCGATTTTCATTGCCATCTTTGGATTGGTTTTATTCTCTTTACTTATTGGAAACATGCAGAAATATTTGGAATCTACATCTGTTAGGGTGGAAGAGATGAGAGTGAAGATGAGGGATGCAGAAGCAACAGAACGATGGATGTCTCAACGTATGTTACCTGATAACTTGAAGCGAAGAATTAGAAGTTATGAACAATACAAATGGAAAGAAAATAGAGGTTTTGAAGAAGAGACGTTAATTCGCAAGCTCCCTAAGGATCTCAGAAGAGACATAAAGCGTCATCTTTGCTTGGATTTAGTTAGAAGAGTGCCAATATTTGAGAGAATGGATGAGCAATTGTTGGATGCAATGTGTGATAGAATGAAACCAGTTTTGTATACAGAGAAGAGTTGCATTATCCGTGAAGGAGATCCGGTTGATGAAATGATTTTCATTATGCGTGGAAAAGTCGCTATCATGACAACAAATGATGAAAGAACTGGTTTCTTCAACTCATTATTTCTAAGACCTGGTGATTTTTGTGGAGAAGAACTTGTAACATGGGCTTTCGATGCACGCTTCACATATCCACCAACTTCAACTAAAACATTAAAAACTATATCAGAAGTTGAAGCATTTGTACTCATGGCTGATGATTTGAAGTTTGTTGTTTCCAAATTTATACATTTTATCGACAGAGAACAACTTCGACACATTTTCAGGGTTTATTCGCCGCAATGGAGGACATGGGGTGCTCGTTTCATACAATTAGCTTGGCGTCGATACTGCAAAAAGAAGATTGAGAGGAAATTGCAAACATCTCTGGTAATCCTTGATGATGACATTGAAAATAATCATCAAGAACCTGCTTTTAAGAGAAAAAAGAGTTCTCTTGTTTCACCTACTGCAGAAAAAATATCTGAAGAACCATGGGACAATACTAGGAAACAAGGTCCATTTTCTGATATGGGTCAAGGTTCTAACCCTGCATTTGAAGATATCCGAAAAGAGTTGGCTACTCAAGCCAACACTCAAGCTGAAATGATGAAACAATTGGATGCTATACAGGAACTTCTGATGGAATTAATCTCTAAACAAACCTAG 2310 0.3857 MEGFRRILVGKESLDISQRRQSLRDENDRSRRRWWFENWRSESSFGIEEKDYVNKRNERPSVSSVLKSIGRRLESGLEKMKKFRRSSSAVSYIFFEESSAVMHKILDPKGPMLQKWNQIFVITCVMAVSVDPLFFYIPVIVGKNKCLDLDEPLQTIASVLRTFFDLFYVICIIFRFRTGFLAPSSRVFGRGVLVGDPVAIMKRYLSSHFIIDILSIIPLPQVIVLAIIPHLKSSRPVLAKDFLKYTVLIQYVPRLLRIRPLYEEVTRTSGILAETAWARAVFNLLLYMLASHVVGANWYLLSVESQVRCWRREMNNDSLFHASYLGCGPRNERVFPLLNSTCIFVDPDEIKDTKTFNFGIFSDALQSLVVDSTTKFAQKFFYCFWWGLGNLSSLGQNLKTSTYLLEIAFAIFIAIFGLVLFSLLIGNMQKYLESTSVRVEEMRVKMRDAEATERWMSQRMLPDNLKRRIRSYEQYKWKENRGFEEETLIRKLPKDLRRDIKRHLCLDLVRRVPIFERMDEQLLDAMCDRMKPVLYTEKSCIIREGDPVDEMIFIMRGKVAIMTTNDERTGFFNSLFLRPGDFCGEELVTWAFDARFTYPPTSTKTLKTISEVEAFVLMADDLKFVVSKFIHFIDREQLRHIFRVYSPQWRTWGARFIQLAWRRYCKKKIERKLQTSLVILDDDIENNHQEPAFKRKKSSLVSPTAEKISEEPWDNTRKQGPFSDMGQGSNPAFEDIRKELATQANTQAEMMKQLDAIQELLMELISKQT 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05200 769 Pfam Cyclic nucleotide-binding domain 535 626 IPR000595 -
Trre14g05200 769 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 96 685 - -
Trre14g05200 769 Pfam Ion transport protein 116 439 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre14g05200 769 MobiDBLite consensus disorder prediction 701 727 - -
Trre14g05200 769 SMART cnmp_10 514 644 IPR000595 -
Trre14g05200 769 Gene3D Helix hairpin bin 437 505 - -
Trre14g05200 769 Gene3D Jelly Rolls 512 630 IPR014710 -
Trre14g05200 769 SUPERFAMILY Voltage-gated potassium channels 107 433 - -
Trre14g05200 769 Gene3D - 118 434 - -
Trre14g05200 769 SUPERFAMILY cAMP-binding domain-like 450 632 IPR018490 -
Trre14g05200 769 CDD CAP_ED 514 628 IPR000595 -
Trre14g05200 769 Coils Coil 432 452 - -
Trre14g05200 769 ProSiteProfiles cAMP/cGMP binding motif profile. 514 585 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05200 Trre-Chr14 57859684 57864576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05200 36 664 Ion Channels AT5G53130 59.248 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05200 K05391 - gmx:100797784 888.641