Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05149 ATGGCGGCGGCGGCGAAGAAAAGAGATGAATCATCGGAATTAAAAGAGCGATTATGGAAACTCGTTAAAACTATCGTCGACTCCGATGACTATACTTTGCAAATCGCCGATGATGCAATCTCTACTCTTTCTTCTCTAAAGGATTTCAAATTCAACAAGTCTCGTAGTAACAATAATAATAATGGAACAAAAAACTCTTTCTCTTCTAAATTGGACCAATTTGCCCTTCCTCCTGAATTTCGTTGCCCTATTTCCACTCAGTTGATGATCGATCCTGTTATCTTGTCCACCGGTCAGACTTATGATAAGCCATTTATTCAGAGGTGGTTGAATGAAGGCAATAGGACATGCCCTCAAACCCAGCAAGTTCTATCTCATACAATTCTTACTCCTAATTACTTGGTCCGAGACATGATTGCGCAGTGGTGTAAGGAGCGTGGTCTTGAGCTACCAAAGGCTAATACTCGGGACACGGATGAAGTTGTGACAGATGCAGACAAAGACCGTTTAAATACATTGCTTCATAAGTTGTCATTGTCTGTTTCTGATCAGAAAGCAGCTGCGAAAGAGCTTCGCTTGTTAACGAAGCGGACGCCTTCGTTTCGAACCCTTTTTAAGGAGTCTGGTGATGTGATCACACAGTTGCTTCGTCCATTATCGCCGGGCAGTGCTTGTACTCACCCTGATCTTCAAGAGGATTTGATCACAACTGTTCTGAATCTCTCAATTCATGACGATAATAAGAAAGTGTTTGCAGAAGATCCAAACCTCATTAACCTGCTGATTGATGCATTGAAATGGGGAACCATTCAAACAAAAAGTAATGCTGCAGCAGCTATTTTCACATTATCAGCTCTTGATTCCAACAAGCACATCATTGGGAAATCTGGAGCTATCAAACATCTGATTGCCGTTCTAGATGAGGGACATCAAATTGCAATGAAAGATGCCGCATCAGCCATATTTAACCTATGTCTTGTCCACGAGAATAAAGGGAGGACAGTACGAGAAGGGGCAGTTAAGGTCATTTTGAATAAGATCATGAACCACATTCTAGTTGATGAGCTCTTGGCTATACTGGCACTCCTCTCCAGTCATCCCACAGCTGTTGAAGAAATGGGCTATCGCGGAGCCGTTTCTTTCTTACTGAGTACTATAAGGGAAAGCACATCAGAAAGGTGCAAGGAAAATTGTGTTGCAATCCTATATACAATCTGTTATAGTGATAGAACAAAGTGGAAGGAAATCAAAGAAGAAGAGAAGACCAATGGTTCACTGTCGAAGCTTGCACAATGCGGAACTTCAAGGGCGAAAAGGAAGGCTATCAGTATTCTAGAGAGGGTTAACAGATCTCCATCGTTAACTCACACTGCTTAG 1377 0.4205 MAAAAKKRDESSELKERLWKLVKTIVDSDDYTLQIADDAISTLSSLKDFKFNKSRSNNNNNGTKNSFSSKLDQFALPPEFRCPISTQLMIDPVILSTGQTYDKPFIQRWLNEGNRTCPQTQQVLSHTILTPNYLVRDMIAQWCKERGLELPKANTRDTDEVVTDADKDRLNTLLHKLSLSVSDQKAAAKELRLLTKRTPSFRTLFKESGDVITQLLRPLSPGSACTHPDLQEDLITTVLNLSIHDDNKKVFAEDPNLINLLIDALKWGTIQTKSNAAAAIFTLSALDSNKHIIGKSGAIKHLIAVLDEGHQIAMKDAASAIFNLCLVHENKGRTVREGAVKVILNKIMNHILVDELLAILALLSSHPTAVEEMGYRGAVSFLLSTIRESTSERCKENCVAILYTICYSDRTKWKEIKEEEKTNGSLSKLAQCGTSRAKRKAISILERVNRSPSLTHTA 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05149 458 FunFam RING-type E3 ubiquitin transferase 75 149 - -
Trre14g05149 458 SUPERFAMILY RING/U-box 70 150 - -
Trre14g05149 458 CDD RING-Ubox_PUB 77 129 IPR045210 -
Trre14g05149 458 PANTHER U BOX DOMAIN-CONTAINING 9 447 - -
Trre14g05149 458 Gene3D - 170 453 IPR011989 -
Trre14g05149 458 SUPERFAMILY ARM repeat 180 448 IPR016024 -
Trre14g05149 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 149 IPR013083 -
Trre14g05149 458 FunFam RING-type E3 ubiquitin transferase 353 454 - -
Trre14g05149 458 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
Trre14g05149 458 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Trre14g05149 458 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05149 Trre-Chr14 57543879 57545871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05149 138 458 U-box Gene Family AT3G07360 58.537 1.52e-122 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05149 - - gmx:100806619 625.935