Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05132 ATGTTGAAGCTCTCTCGCATGCTTCCTTCATCTTCCAGGAATCACTTATTGGAAATTCTTTCGTCTACGAAACTTGAAGTTAGGGATTTCTCCTCCACTGCTGCAAATAACTATTCTGCTAAAGGATATGCTTCAGATCGTATATTTGCTCCTTATTCTGTTTACAAGGGAAAAGCTGCATTCTCACTCAGTCCTTGTCTTCCAACTTTCACTAAGTTGGATTCTGGGGCTCTTGTGGTTGATCGTCGCGGTTCCATAATGATGAGTTTCATGCCTGCTATTGGGGAGCGCAAATATGACTCGGAGAAGAAACAAAGATTTGCCCTATCAGCTACTGAAGTTGGTTCTTTGATAGCCATGGGCCCCCAAGATTCATGTGAATTCTTTCATGACCCCTCAATGAAATCAAGTAATGCTGGTCAAGTAAGGAAGAGCTTATCAATTAAGCCTCATAGCAATGGCTATTTTGTCTCTCTGACTGTTGTTAACACCCTGTTAAATACGAAAGACAATTTCAGTGTTCCTGTTACAACTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGATCGTCTAACTAGTCTGACTAATCAGCAGTCAAGTGAGAAAGTCAGCTTTCAACCGAAGATGAACTCGCACATTTTAGACTTGGAATGGGAAAAGTGA 693 0.417 MLKLSRMLPSSSRNHLLEILSSTKLEVRDFSSTAANNYSAKGYASDRIFAPYSVYKGKAAFSLSPCLPTFTKLDSGALVVDRRGSIMMSFMPAIGERKYDSEKKQRFALSATEVGSLIAMGPQDSCEFFHDPSMKSSNAGQVRKSLSIKPHSNGYFVSLTVVNTLLNTKDNFSVPVTTAEFAVMKTACSFALPHIMGWDRLTSLTNQQSSEKVSFQPKMNSHILDLEWEK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05132 230 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 31 230 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre14g05132 230 Pfam Whirly transcription factor 54 186 IPR013742 GO:0003697|GO:0006355|GO:0006952
Trre14g05132 230 SUPERFAMILY ssDNA-binding transcriptional regulator domain 45 228 IPR009044 GO:0003677|GO:0006355
Trre14g05132 230 Gene3D Transcriptional Coactivator Pc4; Chain A 38 211 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05132 Trre-Chr14 57374609 57377548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05132 31 230 Whirly Transcription Factor Family AT1G71260 64.216 1.27e-90 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Trre14g05132 Whirly 3.1e-53 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05132 K26561 - gmx:100817863 345.895