Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05130 ATGGAACACAGTGACAACCAGTTAAGCTCTTTCTTCCACCACCACAACCACAACCACCACCAACAACAACAACCACAAGGAAATTCCACCACCGTATCCACCACCACTACCACCACCGCAATTCCGACCAATGGACTTTTATCGAACACAGATGGGTCCCACATACTGTATCCTCATTCAGTGGCTTCTGCTGTATCGTCTCAGCTTGAACCAGCTAAGAGGAAGAGAGGAAGACCTAGAAAATATGGAACACCTGAACAAGCTCTAGCTGCTAAAAAAGCTTCTACGTCGTCGTTTTCACCTACTCCACCTTCTGACAACAACAATAGCAACAAGAACACCACTCACTCTTTCTCTCCCTCTCCTTCTTTCTCTTCCAAGAAATCTCATTCTCTCTCTCTAGGCAATGCAGGACAAGGTTTCAGTGCACATGTCATTGCTGTTGCTGCTGGTGAGGATGTTGGCCAGAAAATTATGCAATTCATGCAACAAAATAGGGGTGAGGTATGCATTCTATCTGCATCCGGTTCCATCTCTAATGCCTCTCTTCGTCAACCAGCATCTTCAGGAGGCAACATTACATATGAGGGTCGGTTTGATATTATTTCGCTTACCGGTTCCTATGTCCGTAATGAAACCGGAGTGCGAAGTGGTGGTCTCAGTGTATGCTTGTCTAATTCTGATGGACAAATCATAGGTGGTGGTGTTGGTGGGCCCCTTAAAGCTGCCGGTCCAGTTCAGGTCATTGTTGGTACATTTTTTGTCGACAACAAGAAGGATAATAGTGCTGGTGGAAAAGGTGATGCCTCTACCGGTAAGTTGCCATCACCAGTTGGCGAATCAGCATCAAATTTAGGTTACCGCCAAACAGTTGACAGTTCCAGTGGGAATCCAATGCGGGGAAATGAAGAACATCAAGCTATGGGGGGAAGTCATTTCATGATTCAACAGCTTGGTTTACATGTGACACCTCCCAGGTCCACAGACTGGGGGAATCATTCTGATTCAAGACATGCTAGTTATGACCTTTCAGGAAGAACAGGTCATGGGTCACACCAGTCTCCTGAGAATGGAGGCTATGACCAAATTCCTGATTGA 1098 0.4608 MEHSDNQLSSFFHHHNHNHHQQQQPQGNSTTVSTTTTTTAIPTNGLLSNTDGSHILYPHSVASAVSSQLEPAKRKRGRPRKYGTPEQALAAKKASTSSFSPTPPSDNNNSNKNTTHSFSPSPSFSSKKSHSLSLGNAGQGFSAHVIAVAAGEDVGQKIMQFMQQNRGEVCILSASGSISNASLRQPASSGGNITYEGRFDIISLTGSYVRNETGVRSGGLSVCLSNSDGQIIGGGVGGPLKAAGPVQVIVGTFFVDNKKDNSAGGKGDASTGKLPSPVGESASNLGYRQTVDSSSGNPMRGNEEHQAMGGSHFMIQQLGLHVTPPRSTDWGNHSDSRHASYDLSGRTGHGSHQSPENGGYDQIPD 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05130 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 253 IPR005175 -
Trre14g05130 365 MobiDBLite consensus disorder prediction 322 365 - -
Trre14g05130 365 Gene3D - 142 266 - -
Trre14g05130 365 ProSiteProfiles PPC domain profile profile. 137 279 IPR005175 -
Trre14g05130 365 MobiDBLite consensus disorder prediction 276 301 - -
Trre14g05130 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 17 299 IPR039605 GO:0003680
Trre14g05130 365 MobiDBLite consensus disorder prediction 260 305 - -
Trre14g05130 365 MobiDBLite consensus disorder prediction 16 46 - -
Trre14g05130 365 MobiDBLite consensus disorder prediction 21 46 - -
Trre14g05130 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 254 - -
Trre14g05130 365 MobiDBLite consensus disorder prediction 90 132 - -
Trre14g05130 365 CDD DUF296 144 253 IPR005175 -
Trre14g05130 365 MobiDBLite consensus disorder prediction 64 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05130 Trre-Chr14 57359844 57363241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05130 30 365 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 50.407 1.12e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05130 - - gmx:100809675 474.937