Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05114 ATGGCAAAGACTCCTTGTTGTGAAAGGATGGGAATGAGGAAAGGACCATGGAGTGCTGAAGAAGATCATATATTAATTTCTTATATTCAAGCATATGGCCATGAAAATTGGCGTGCCCTTCCTAAACAAGCTGGTTTGTTAAGGTGTGGTAAGAGTTGTAGGCTTCGATGGATAAATTACTTGAGACCAGATATCAAACGAGGAAAATTCAGCCAGGAAGAAGAAGATTCCATCTTAAAGCTACATGAAATTCTTGGAAATAAATGGTCAGCTATTGCAGCAAGATTACCAGGAAGAACGGATAATGAAGTAAAGAACTTTTGGCATACTCATTTGAAGAAAAGGGTCCAAAAGAATAAAGTGCATGATGCCAATATTACCTCTTTTTCATATACTTTGCAAGAGGCACAAGCAAGTGATGCTTCTTCTAGTGTCGGTGAAAAAATGGTGATTTCTAATTATGGTTTAGTAGCCTCAAGTAAGGATTCATCAGTTGTAGGCACAGAATTTTGCAATGCAATCTCTTGTGATACTTTAGGAGAAAATATGGATAATCATGGTTCAAGTCAGATTAGTGAAGAAATGGAATTTTGGTATAATGTTTTTATCAAATCAGGGCAGACATCATGGGGGAATGGAAATTTAGGATAG 651 0.3687 MAKTPCCERMGMRKGPWSAEEDHILISYIQAYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGKFSQEEEDSILKLHEILGNKWSAIAARLPGRTDNEVKNFWHTHLKKRVQKNKVHDANITSFSYTLQEAQASDASSSVGEKMVISNYGLVASSKDSSVVGTEFCNAISCDTLGENMDNHGSSQISEEMEFWYNVFIKSGQTSWGNGNLG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05114 216 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre14g05114 216 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre14g05114 216 CDD SANT 69 112 IPR001005 -
Trre14g05114 216 CDD SANT 16 61 IPR001005 -
Trre14g05114 216 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre14g05114 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre14g05114 216 Gene3D - 14 66 - -
Trre14g05114 216 Gene3D - 68 138 - -
Trre14g05114 216 SMART sant 66 114 IPR001005 -
Trre14g05114 216 SMART sant 13 63 IPR001005 -
Trre14g05114 216 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 166 - -
Trre14g05114 216 FunFam MYB-related transcription factor 13 66 - -
Trre14g05114 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre14g05114 216 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre14g05114 216 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05114 Trre-Chr14 57251638 57255023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05114 1 202 MYB Transcription Factor Family AT2G31180 47.436 2.41e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g05114 Myb_DNA-binding 7.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05114 K09422 - gmx:102663040 309.301