Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05087 ATGAGGATTATGATAAAGGGAGGTGTTTGGAAAAACACCGAGGATGAAATTCTGAAAGCTGCTGTTATGAAATATGGTAAAAATCAATGGGCTCGTATATCTTCGCTTCTTGTTCGTAAATCTGCCAAACAGTGTAAAGCTCGTTGGTATGAGTGGTTAGATCCTTCCATTAAGAAAACCGAATGGACTAGAGAAGAAGATGAGAAGTTACTTCATCTTGCTAAGCTTATGCCTACTCAGTGGAGAACAATTGCTCCCATTGTTGGTCGTACTCCTTCGCAGTGTCTTGAACGATATGAGAAACTCCTTGATGCCGCTTGTGTTAAGGATGATAATTATGAGCCTGGTGATGATCCTAGGAAATTGCGTCCGGGGGAGATAGACCCGAATCCTGAGTCTAAGCCTGCGCGACCTGATCCTGTTGATATGGATGAGGATGAGAAGGAGATGCTTTCTGAAGCACGTGCTCGGTTGGCTAACACGAAAGGTAAGAAAGCGAAAAGGAAAGCTAGGGAGAAACAGCTTGAGGAAGCTAGGAGGCTTGCTTCTTTACAGAAAAAGAGAGAACTGAAGGCTGCTGGAATTGATGCAAGGCAGCGGAGGAGGAAAAGAAGAGGGATTGACTATAATGCTGAGATTCCCTTTGAGAAGAGGCCTCCTCCGGGTTATTTTGATGTTGCTGATGAGGATAGGGTGGTGGAGCAGCCAGCATTCCCCACTACTATTGAAGAACTTGAGGGAAAAAGAAGGATTGATGTTGAGGCGCAGCTGAGAAAGCAAGACGTTGCAAGGAATAAAATTGCTGAGAGGCAAGATGCCCCTGCTGCTATTCTACATGCCAACAAGTTGAATGACCCAGAAACAGTTAGAAAGAGATCAAAACTTATGCTTCCACCACCCCAGATTTCTGACCAAGAATTGGATGAAATTGCCAAGTTGGGTTATGCCAGTGACCTTGTGGGCAGCGAGGAACTCGCTGAAGGCAGCAGTGCTACACGTGCTCTTCTCTCTAATTATCCACAGACACCCAACCAAGCAATGACTCCTTTGAGAACTCCTCAGAGAACACCAGCTAGTAAAGGAGATGCTATCATGATGGAAGCTGAAAATTTGGCCAGGTTGAGGGAGTCTCAGACACCACTGTTGGGAGGAGAGAACCCGGAGTTGCATCCGTCAGATTTTTCTGGGGTCACTCCTAAGAAAAAGGAAATTCACACTCCAAACCCACTGCTGACTCCCTCTGCAACCCCTGGAAGTGCAGGCCTTACTCCCAGAAGTGGTATGACACCGGCAAGGGATGGTTTTTCTTTTGGCATGACTCCTAAGGGAACTCCTCTTAGGGATGAGCTACATATCAATGAAGATATGGAGATGCATGACAGTGCTAAACTCGAGCTACGGAGACAAGCTGATATGAAAAAAAGTTTGCGCTCTGGTTTAAGCAGCCTTCCACAGCCCAAAAATGAGTACCAGATAGTGATGCAACCAGTTCAAGAAGATGCTGAAGAGCCTGAGGAAAAGATTGAGGAGGATATGTCAGATAGAATGGCTAGAGAAAAGGCTGAAGAAGAGGCACGGCAGCAGGCATTACTTAGAAAACGATCAAAAGTCCTTCAAAGGGAACTTCCTAGGCCTCCTCCAGCATCTATCGAGCTTATTAGGAACTCGTTGATAAGAGCTGACGGGGACAAGAGTTCATTTGTTCCACCAACTAATATTGAGCAAGCTGATGAGATGATAAAAAGGGAGCTTCTAACCTTACTGGAGCATGACAATGCCAAATATCCACTTGAGGAGATAGCTAATAAGGAGAGGAAGAAAGGATCCAAACGAGCAGCAAATGGGCCTGCTGTCCCTGTCATAGAAGATTTTCAGGAGGACGAGATGAAAGAGGCTGATAAGTTGATAAAAGATGAAGCCGAGTATCTTCGTGTGGCAATGGGGCATGAAAATGATTCCCTTGATGAATTTGTTGAAGCGCATACCACTTGCATTAATGATTTAATGTTCTTTGTCACCCGTAATGAATATGCTCTATCAAGTGTTGCCGGAAACATGGAGAAGCTAGCAGCTTTGCAGAATGAATTTGAGAATGTGAGAATTAAGCTGGATGCTGGTAAGGAGAAATTGATACGACTTGAGAAGAAGGTTACAGTACTCACGCAAGGGTATGAGATGAGATCAAAAATGGGTCTTTGGCCGCAGATCGAGGCCACTTTCAAGCAGATGGATGTGGCTGCAACAGAATTCGAGTGTTTTCAAGCTTTGAAAAAGCAGGAGCAGTTAGCAGCAAAACATAGGATAAACAACCTTTGGTCTGAAGTTCAGAAGCAAAAGGAACTTGAGAGAACATTACAGAAGAGATACGGAGATCTTATGGTAGAGCTGGAAAGGACACAAAATACAATGGAGCAGTTCAGGGTAGAAGCACAACAGAAGGAAGAAATTGAAGCCAAGAACCATGCAATAGAAGAGGTACAAGCACAACAGCAAGAAGAAACTGAAGCAAAGAATCATGTCCTTGAGAGTACTGAAGCCACGGCTGATGAAATTAATGTGCAGGGTACAGAAAATTGTGAAGCAGTACCCATCTCAGCTGACCAGGAAATAGACACTGTGCAAGATCAGGCTACTTCTAGCTCCAAAATTGATATGGATGTGGATACATTGCCAGATGCACCTGCTGCAGAGGATGAAAATTCAAAAGCTGTAGAAGGCAAAAACATTAGAAGCGTTATTGAAAATAGTGAGACCGCGGTAGATACAAGTGCTGCAGTGGAAATAAAAAATAATGAGGAAAATGGTGAGGGTCAAGATAATGCCAATCCAGATGCGGTTATTGAAGCTGCAAACAAATCTGATAACATAAAAGAAGCTACTCTGCTTGATGACATGCAAGTTGCTGACGGTAAAGGAGATGAGGCAAATTAG 2931 0.4411 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTKGKKAKRKAREKQLEEARRLASLQKKRELKAAGIDARQRRRKRRGIDYNAEIPFEKRPPPGYFDVADEDRVVEQPAFPTTIEELEGKRRIDVEAQLRKQDVARNKIAERQDAPAAILHANKLNDPETVRKRSKLMLPPPQISDQELDEIAKLGYASDLVGSEELAEGSSATRALLSNYPQTPNQAMTPLRTPQRTPASKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPKKKEIHTPNPLLTPSATPGSAGLTPRSGMTPARDGFSFGMTPKGTPLRDELHINEDMEMHDSAKLELRRQADMKKSLRSGLSSLPQPKNEYQIVMQPVQEDAEEPEEKIEEDMSDRMAREKAEEEARQQALLRKRSKVLQRELPRPPPASIELIRNSLIRADGDKSSFVPPTNIEQADEMIKRELLTLLEHDNAKYPLEEIANKERKKGSKRAANGPAVPVIEDFQEDEMKEADKLIKDEAEYLRVAMGHENDSLDEFVEAHTTCINDLMFFVTRNEYALSSVAGNMEKLAALQNEFENVRIKLDAGKEKLIRLEKKVTVLTQGYEMRSKMGLWPQIEATFKQMDVAATEFECFQALKKQEQLAAKHRINNLWSEVQKQKELERTLQKRYGDLMVELERTQNTMEQFRVEAQQKEEIEAKNHAIEEVQAQQQEETEAKNHVLESTEATADEINVQGTENCEAVPISADQEIDTVQDQATSSSKIDMDVDTLPDAPAAEDENSKAVEGKNIRSVIENSETAVDTSAAVEIKNNEENGEGQDNANPDAVIEAANKSDNIKEATLLDDMQVADGKGDEAN 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05087 976 MobiDBLite consensus disorder prediction 498 528 - -
Trre14g05087 976 Gene3D - 59 114 - -
Trre14g05087 976 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Trre14g05087 976 Gene3D - 5 58 - -
Trre14g05087 976 MobiDBLite consensus disorder prediction 338 358 - -
Trre14g05087 976 Coils Coil 796 836 - -
Trre14g05087 976 Coils Coil 167 187 - -
Trre14g05087 976 MobiDBLite consensus disorder prediction 510 528 - -
Trre14g05087 976 MobiDBLite consensus disorder prediction 957 976 - -
Trre14g05087 976 SMART sant 58 105 IPR001005 -
Trre14g05087 976 SMART sant 6 55 IPR001005 -
Trre14g05087 976 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Trre14g05087 976 MobiDBLite consensus disorder prediction 338 355 - -
Trre14g05087 976 MobiDBLite consensus disorder prediction 409 423 - -
Trre14g05087 976 MobiDBLite consensus disorder prediction 872 903 - -
Trre14g05087 976 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Trre14g05087 976 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Trre14g05087 976 Pfam pre-mRNA splicing factor component 406 655 IPR021786 -
Trre14g05087 976 FunFam CDC5 cell division cycle 5-like 60 120 - -
Trre14g05087 976 MobiDBLite consensus disorder prediction 380 424 - -
Trre14g05087 976 FunFam CDC5 cell division cycle 5-like 5 59 - -
Trre14g05087 976 CDD SANT_CDC5_II 55 106 IPR047240 -
Trre14g05087 976 Pfam Myb-like DNA-binding domain 10 70 - -
Trre14g05087 976 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 803 IPR047242 GO:0000398|GO:0000974
Trre14g05087 976 MobiDBLite consensus disorder prediction 110 150 - -
Trre14g05087 976 Coils Coil 689 716 - -
Trre14g05087 976 CDD SANT 10 53 IPR001005 -
Trre14g05087 976 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05087 Trre-Chr14 57127683 57133093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05087 1 833 MYB-Related Transcription Factor Family AT1G09770 74.402 0.0 1224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre14g05087 Myb_Cef 8e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05087 K12860 - gmx:100790369 1471.06