Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre14g05086 ATGCATTCTTCATCTTCACCCGCTCTTCCCACTATTATGGATAGCAAATGTATGAAACCCTCGGGTTCTTTTCATTGTTCACCTGTCGGGGGTCTGAATACAAATCCTACCTCACTGCAAGCTGCATCACTGAATCCGATCAGAAGTGTTCGTCCGGTGTTTTCAACCACTGCTGAATGTCCTGGCGGCATTCCTTTTTCTCCTATTTCACAGCATGATAAGCAATATCAAAATTCTCCCTTCACTTCTCAGACATTAGGTGACAATGTGTCTTCGGAAACACACTCAACAACATTCACTTCTCACCCTCAACAAAATGATGATATTTCTTGGGGACCAGATCCAATGCAGGATATTCTTAGTTTTCCTGAAATTTTTTCTGTTCAGCATGATCAGGTGGAAAACAGTGCTTGTTACATGAATGATGACAATGTCAAAAAATCTGATTTCGGGGAATGGGTTGAACAGCTAATGACAATTGATGATACTCTCCACCCAAATTGGAATCAACTTCTCGGTGATGACAATGCTGCAGAACCAACACCAAAGGCAATGCAGGTTTCTCAGACTCCGCATACACCATCTGCAGAAGTTAACCTTCTTTGCAATTCAGCATCAGCATCAACTGCATCTCAAACAAAGCCTAGAATGCGTTGGAGTCCAGAACTTCACGAGGCCTTTGTGGAAGCAGTTAACCAGCTTGGTGGCAGTGACAAGGCTACTCCAAAAGGTGTCTTGAATCTGATGAATGTTGAAGGCCTTACCATCTACCATGTAAAAAGCCACCTGCAGAAGTATAGAACTGCCAGATACAAACCTGAGTCACCAGAAGAAACTTCTGAGAAAAAGACGAGTTCAATTGAAGAAATGAAATCTCTAGACTTGAAAACGAGTAAGGGGATAACCGAAGCATTACGGTTGCAGATGGAACTCCAGAAGCGGCTCCACGAACAACTTGAGATTCAAAGGAAGTTGCAGATTCAAATTGAAAACCAAGGGAAACATCTTGAGATGATGTTTGAGAAACAGAAACTGATCGGTGACAACAAGGGCTCTAGCACTTCAAACGCGCCTTCTGCTGCACTGTTGGACACGGCGCTACCTTCTTCTCCTGTAGACAATTCAAAAGCATCAAATGACGAACACAGCAAATTAAGATGTAACACTGAAGAAAGTTCCCAGGATGCAAGCAAAAAAGAACTGGTAGATGAAGCTGAAGTTACCAATGAACATGAGAGGGTAGATGATCAGTTTTCTGACGCTCCCCCGACAAAACGGGCAAAGATTCAATGA 1293 0.4292 MHSSSSPALPTIMDSKCMKPSGSFHCSPVGGLNTNPTSLQAASLNPIRSVRPVFSTTAECPGGIPFSPISQHDKQYQNSPFTSQTLGDNVSSETHSTTFTSHPQQNDDISWGPDPMQDILSFPEIFSVQHDQVENSACYMNDDNVKKSDFGEWVEQLMTIDDTLHPNWNQLLGDDNAAEPTPKAMQVSQTPHTPSAEVNLLCNSASASTASQTKPRMRWSPELHEAFVEAVNQLGGSDKATPKGVLNLMNVEGLTIYHVKSHLQKYRTARYKPESPEETSEKKTSSIEEMKSLDLKTSKGITEALRLQMELQKRLHEQLEIQRKLQIQIENQGKHLEMMFEKQKLIGDNKGSSTSNAPSAALLDTALPSSPVDNSKASNDEHSKLRCNTEESSQDASKKELVDEAEVTNEHERVDDQFSDAPPTKRAKIQ 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre14g05086 430 Coils Coil 302 322 - -
Trre14g05086 430 Pfam Myb-like DNA-binding domain 216 267 IPR001005 -
Trre14g05086 430 MobiDBLite consensus disorder prediction 268 291 - -
Trre14g05086 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 271 IPR017930 -
Trre14g05086 430 SUPERFAMILY Homeodomain-like 212 268 IPR009057 -
Trre14g05086 430 MobiDBLite consensus disorder prediction 70 110 - -
Trre14g05086 430 Gene3D - 213 272 - -
Trre14g05086 430 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 268 IPR006447 GO:0003677
Trre14g05086 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 197 399 IPR044848 GO:0003700
Trre14g05086 430 FunFam Myb family transcription factor 213 271 - -
Trre14g05086 430 MobiDBLite consensus disorder prediction 365 430 - -
Trre14g05086 430 MobiDBLite consensus disorder prediction 64 110 - -
Trre14g05086 430 Pfam MYB-CC type transfactor, LHEQLE motif 301 344 IPR025756 -
Trre14g05086 430 MobiDBLite consensus disorder prediction 377 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre14g05086 Trre-Chr14 57122671 57125263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre14g05086 93 383 G2-like Transcription Factor Family AT3G04450 48.408 5.54e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre14g05086 Myb_DNA-binding 9.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre14g05086 - - mtr:25499705 689.878